Evidence map›Paper›PMID 35918324›Full record

ArticleNature communications2022

Multiplex base editing to convert TAG into TAA codons in the human genome.

Yuting Chen, Eriona Hysolli, Anlu Chen, Stephen Casper, Songlei Liu, Kevin Yang, Chenli Liu, George Church

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Technologies for engineering repetitive DNA.Quantitative biology (Beijing, China) · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. The design and engineering of synthetic genomes.Nature reviews. Genetics · 2025
    Review
  9. Article
  10. Review
  11. Review
  12. Genomically recodedbioRxiv : the preprint server for biology · 2024
    Article
  13. Synthetic genomes unveil the effects of synonymous recoding.bioRxiv : the preprint server for biology · 2024
    Article
  14. Review
  15. Article
  16. Strategies for precise gene edits in mammalian cells.Molecular therapy. Nucleic acids · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Yuting Chen *Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA.
Eriona Hysolli *Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA. eriona.hysolli@gmail.com.ORCID 0000-0002-9677-7169
Anlu Chen *Division of Endocrinology, Diabetes and Metabolism, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, 02215, USA.
Stephen Casper *Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA.
Songlei LiuDepartment of Genetics, Harvard Medical School, Boston, MA, 02115, USA.ORCID 0000-0001-8607-8260
Kevin YangDepartment of Genetics, Harvard Medical School, Boston, MA, 02115, USA.
Chenli LiuCAS Key Laboratory of Quantitative Engineering Biology, Center for Genome Engineering and Therapy, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518055, China. cl.liu@siat.ac.cn.ORCID 0000-0003-3029-7207
George ChurchDepartment of Genetics, Harvard Medical School, Boston, MA, 02115, USA. gchurch@genetics.med.harvard.edu.ORCID 0000-0003-3535-2076
Harvard University · USBeth Israel Deaconess Medical Center · USChinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole-genome recoding has been shown to enable nonstandard amino acids, biocontainment and viral resistance in bacteria. Here we take the first steps to extend this to human cells demonstrating exceptional base editing to convert TAG to TAA for 33 essential genes via a single transfection, and examine base-editing genome-wide (observing ~40 C-to-T off-target events in essential gene exons). We also introduce GRIT, a computational tool for recoding. This demonstrates the feasibility of recoding, and highly multiplex editing in mammalian cells.

Indexed as

Gene EditingGenome, HumanAnimalsCodon, TerminatorCRISPR-Cas SystemsExonsGenes, EssentialHumansMammalsCodon, Terminator

Identifiers

PMID35918324
PMCPMC9345975
OpenAlexW4289525162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.