Evidence map›Paper›PMID 35916734›Full record

ArticleThe Plant cell2022

Loss-of-function of SAWTOOTH 1 affects leaf dorsiventrality genes to promote leafy heads in lettuce.

Guanghui An, Changchun Yu, Chenghuan Yan, Menglu Wang, Weiyi Zhang, Yue Jia, Chunmei Shi, Robert M Larkin, Jiongjiong Chen, Dean Lavelle and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

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  11. Horticulture research · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Guanghui AnKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-7919-6194
Changchun YuKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-6783-397X
Chenghuan YanKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0003-3174-7257
Menglu WangKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-7509-8952
Weiyi ZhangKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-8530-3921
Yue JiaKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0001-9154-0982
Chunmei ShiKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-1218-2126
Robert M LarkinKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-4665-3731
Jiongjiong ChenKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0002-1690-8510
Dean LavelleGenome Center and Department of Plant Sciences, University of California, Davis, California 95616, USA.ORCID 0000-0002-2060-0092
Richard W MichelmoreGenome Center and Department of Plant Sciences, University of California, Davis, California 95616, USA.ORCID 0000-0002-7512-592X
Hanhui KuangKey Laboratory of Horticultural Plant Biology and Hubei Hongshan Laboratory, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan 430070, China.ORCID 0000-0003-4870-0578
Huazhong Agricultural University · CNUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mechanisms underlying leafy heads in vegetables are poorly understood. Here, we cloned a quantitative trait locus (QTL) controlling leafy heads in lettuce (Lactuca sativa). The QTL encodes a transcription factor, SAWTOOTH 1 (LsSAW1), which has a BEL1-like homeodomain and is a homolog of Arabidopsis thaliana. A 1-bp deletion in Lssaw1 contributes to the development of leafy heads. Laser-capture microdissection and RNA-sequencing showed that LsSAW1 regulates leaf dorsiventrality and loss-of-function of Lssaw1 downregulates the expression of many adaxial genes but upregulates abaxial genes. LsSAW1 binds to the promoter region of the adaxial gene ASYMMETRIC LEAVES 1 (LsAS1) to upregulate its expression. Overexpression of LsAS1 compromised the effects of Lssaw1 on heading. LsSAW1 also binds to the promoter region of the abaxial gene YABBY 1 (LsYAB1), but downregulates its expression. Overexpression of LsYAB1 led to bending leaves in LsSAW1 genotypes. LsSAW1 directly interacts with KNOTTED 1 (LsKN1), which is necessary for leafy heads in lettuce. RNA-seq data showed that LsSAW1 and LsKN1 exert antagonistic effects on the expression of thousands of genes. LsSAW1 compromises the ability of LsKN1 to repress LsAS1. Our results suggest that downregulation or loss-of-function of adaxial genes and upregulation of abaxial genes allow for the development of leafy heads.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantLactucaPlant LeavesTranscription FactorsArabidopsis ProteinsTranscription Factors

Identifiers

PMID35916734
PMCPMC9614500
OpenAlexW4289518636

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.