Evidence map›Paper›PMID 35916224›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Data collection from crystals grown in microfluidic droplets.

Gyorgy Babnigg, Darren Sherrell, Youngchang Kim, Jessica L Johnson, Boguslaw Nocek, Kemin Tan, Danny Axford, Hui Li, Lance Bigelow, Lukas Welk and 3 more

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Other Techniques.Advances in biochemical engineering/biotechnology · 2026
    Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Gyorgy BabniggBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.ORCID 0000-0002-9838-1803
Darren SherrellStructural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.ORCID 0000-0002-6393-8800
Youngchang KimStructural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.ORCID 0000-0002-1610-4889
Jessica L JohnsonBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Boguslaw NocekBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Kemin TanStructural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Danny AxfordHarwell Science and Innovation Campus, Diamond Light Source, Fermi Avenue, Didcot OX11 0DE, United Kingdom.ORCID 0000-0001-7694-8525
Hui LiBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Lance BigelowBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Lukas WelkBiosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.ORCID 0000-0003-4276-3770
Michael EndresStructural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.
Robin L OwenHarwell Science and Innovation Campus, Diamond Light Source, Fermi Avenue, Didcot OX11 0DE, United Kingdom.ORCID 0000-0002-2104-7057
Andrzej JoachimiakStructural Biology Center, X-ray Science Division, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, IL 60439, USA.ORCID 0000-0003-2535-6209
Argonne National Laboratory · USDiamond Light Source · GB

Funding

The Midwest Center for Structural Genomics - Community ResourceR24GM115586 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2015 to 2017
$2.8M
NIGMS NIH HHS R24 GM115586
6 · The paper itself

Abstract

Protein crystals grown in microfluidic droplets have been shown to be an effective and robust platform for storage, transport and serial crystallography data collection with a minimal impact on diffraction quality. Single macromolecular microcrystals grown in nanolitre-sized droplets allow the very efficient use of protein samples and can produce large quantities of high-quality samples for data collection. However, there are challenges not only in growing crystals in microfluidic droplets, but also in delivering the droplets into X-ray beams, including the physical arrangement, beamline and timing constraints and ease of use. Here, the crystallization of two human gut microbial hydrolases in microfluidic droplets is described: a sample-transport and data-collection approach that is inexpensive, is convenient, requires small amounts of protein and is forgiving. It is shown that crystals can be grown in 50-500 pl droplets when the crystallization conditions are compatible with the droplet environment. Local and remote data-collection methods are described and it is shown that crystals grown in microfluidics droplets and housed as an emulsion in an Eppendorf tube can be shipped from the US to the UK using a FedEx envelope, and data can be collected successfully. Details of how crystals were delivered to the X-ray beam by depositing an emulsion of droplets onto a silicon fixed-target serial device are provided. After three months of storage at 4°C, the crystals endured and diffracted well, showing only a slight decrease in diffracting power, demonstrating a suitable way to grow crystals, and to store and collect the droplets with crystals for data collection. This sample-delivery and data-collection strategy allows crystal droplets to be shipped and set aside until beamtime is available.

Indexed as

MicrofluidicsProteinsCrystallizationCrystallography, X-RayData CollectionEmulsionsHumansEmulsionsProteinsemulsionsfixed targetsfucosidaseshydrolaseslow dosemicrofluidic dropletsserial crystallographysialate O-acetylesteraseX-ray data collectionα–β fold

Identifiers

PMID35916224
PMCPMC9344473
OpenAlexW4286111391

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.