Evidence map›Paper›PMID 35916223›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Native SAD phasing at room temperature.

Jack B Greisman, Kevin M Dalton, Candice J Sheehan, Margaret A Klureza, Igor Kurinov, Doeke R Hekstra

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Chaperonin recognition of protein dynamics drives drug resistance.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Journal of applied crystallography · 2024
    Article
  7. Perturbative diffraction methods resolve a conformational switch that facilitates a two-step enzymatic mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. MatchMaps: Non-isomorphous difference maps for X-ray crystallography.bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Introduction to the virtual thematic issue on room-temperature biological crystallography.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  11. Article
  12. Room-temperature serial synchrotron crystallography of the human phosphatase PTP1B.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Jack B GreismanDepartment of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, Massachusetts, USA.ORCID 0000-0002-6394-2658
Kevin M DaltonDepartment of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, Massachusetts, USA.ORCID 0000-0001-9396-085X
Candice J SheehanDepartment of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, Massachusetts, USA.
Margaret A KlurezaDepartment of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts, USA.ORCID 0000-0001-5774-1297
Igor KurinovNE-CAT, Department of Chemistry and Chemical Biology, Cornell University, 9700 South Cass Avenue, Argonne, Illinois, USA.
Doeke R HekstraDepartment of Molecular and Cellular Biology, Harvard University, 52 Oxford Street, Cambridge, Massachusetts, USA.ORCID 0000-0003-2332-9223

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Identifying Principles of Protein Mechanics by Applying Force and Observing MotionDP2GM141000 · NIGMS · HARVARD UNIVERSITY · PI HEKSTRA, DOEKE ROMKE · 2020 to 2020
$2.4M
National Science Foundation DGE1745303New York Community Trust 338034NIGMS NIH HHS DP2 GM141000NIGMS NIH HHS P30 GM124165Searle Scholars Program SSP-2018-3240
6 · The paper itself

Abstract

Single-wavelength anomalous diffraction (SAD) is a routine method for overcoming the phase problem when solving macromolecular structures. This technique requires the accurate measurement of intensities to determine differences between Bijvoet pairs. Although SAD experiments are commonly conducted at cryogenic temperatures to mitigate the effects of radiation damage, such temperatures can alter the conformational ensemble of the protein and may impede the merging of data from multiple crystals due to non-uniform freezing. Here, a strategy is presented to obtain high-quality data from room-temperature, single-crystal experiments. To illustrate the strengths of this approach, native SAD phasing at 6.55 keV was used to solve four structures of three model systems at 295 K. The resulting data sets allow automatic phasing and model building, and reveal alternate conformations that reflect the structure of proteins at room temperature.

Indexed as

ProteinsCrystallizationCrystallography, X-RayModels, MolecularProtein ConformationTemperatureProteinsmodel buildingnative SADphasingroom temperatureX-ray crystallography

Identifiers

PMID35916223
PMCPMC9344477

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.