Evidence map›Paper›PMID 35916221›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Probing ligand binding of endothiapepsin by `temperature-resolved' macromolecular crystallography.

Chia Ying Huang, Sylvain Aumonier, Sylvain Engilberge, Deniz Eris, Kate Mary Louise Smith, Filip Leonarski, Justyna Aleksandra Wojdyla, John H Beale, Dominik Buntschu, Anuschka Pauluhn and 4 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  6. A snapshot love story: what serial crystallography has done and will do for us.Acta crystallographica. Section D, Structural biology · 2024
    Review
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  14. Introduction to the virtual thematic issue on room-temperature biological crystallography.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  15. Relating protein crystal structure to ligand-binding thermodynamics.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Chia Ying HuangSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-7676-0239
Sylvain AumonierSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-1568-2150
Sylvain EngilbergeSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0001-8680-6790
Deniz ErisSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.
Kate Mary Louise SmithSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.
Filip LeonarskiSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-2563-7169
Justyna Aleksandra WojdylaSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-8975-4137
John H BealeSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0003-1171-2428
Dominik BuntschuSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.
Anuschka PauluhnSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.
May Elizabeth SharpeSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.
Alexander MetzIdorsia Pharmaceuticals Ltd, Hegenheimermattweg 91, 4123 Allschwil, Switzerland.
Vincent OliericSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-0533-7222
Meitian WangSwiss Light Source, Paul Scherrer Institut, Forschungsstrasse 111, Villigen-PSI, 5232 Villigen, Switzerland.ORCID 0000-0002-5340-3036

Funding

Horizon 2020 Framework Programme 884104Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 182369Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung 198290
6 · The paper itself

Abstract

Continuous developments in cryogenic X-ray crystallography have provided most of our knowledge of 3D protein structures, which has recently been further augmented by revolutionary advances in cryoEM. However, a single structural conformation identified at cryogenic temperatures may introduce a fictitious structure as a result of cryogenic cooling artefacts, limiting the overview of inherent protein physiological dynamics, which play a critical role in the biological functions of proteins. Here, a room-temperature X-ray crystallographic method using temperature as a trigger to record movie-like structural snapshots has been developed. The method has been used to show how TL00150, a 175.15 Da fragment, undergoes binding-mode changes in endothiapepsin. A surprising fragment-binding discrepancy was observed between the cryo-cooled and physiological temperature structures, and multiple binding poses and their interplay with DMSO were captured. The observations here open up new promising prospects for structure determination and interpretation at physiological temperatures with implications for structure-based drug discovery.

Indexed as

ProteinsAspartic Acid EndopeptidasesCrystallography, X-RayLigandsMacromolecular SubstancesTemperatureAspartic Acid EndopeptidasesEndothia aspartic proteinaseLigandsMacromolecular SubstancesProteinsconformational heterogeneityendothiapepsinfragment bindingprotein plasticityroom temperature macromolecular crystallography

Identifiers

PMID35916221
PMCPMC9344481

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.