Evidence map›Paper›PMID 35915168›Full record

ArticleThe ISME journal2022

Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N

Søren Hallstrøm, Jean-Baptiste Raina, Martin Ostrowski, Donovan H Parks, Gene W Tyson, Philip Hugenholtz, Roman Stocker, Justin R Seymour, Lasse Riemann

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Particle-associated NScience advances · 2025
    Article
  8. Article
  9. Article
  10. Nitrogen fixation under declining Arctic sea ice.Communications earth & environment · 2025
    Article
  11. Article
  12. Review
  13. Dynamic in situ detection in iRhizo-Chip reveals diurnal fluctuations ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Søren HallstrømMarine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark.
Jean-Baptiste RainaClimate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.ORCID 0000-0002-7508-0004
Martin OstrowskiClimate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.ORCID 0000-0002-4357-3023
Donovan H ParksAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia.ORCID 0000-0001-6662-9010
Gene W TysonCentre for Microbiome Research, School of Biomedical Science, Translational Research Institute, Queensland University of Technology, Woolloongabba, QLD, Australia.ORCID 0000-0001-8559-9427
Philip HugenholtzAustralian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, St. Lucia, QLD, Australia.ORCID 0000-0001-5386-7925
Roman StockerInstitute of Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, Zurich, Switzerland.ORCID 0000-0002-3199-0508
Justin R SeymourClimate Change Cluster, Faculty of Science, University of Technology Sydney, Sydney, NSW, Australia.ORCID 0000-0002-3745-6541
Lasse RiemannMarine Biological Section, Department of Biology, University of Copenhagen, Helsingør, Denmark. lriemann@bio.ku.dk.ORCID 0000-0001-9207-2543
University of Technology Sydney · AUThe University of Queensland · AUUniversity of Copenhagen · DKETH Zurich · CHTranslational Research Institute · AU

Funding

Det Frie Forskningsråd (Danish Council for Independent Research) 6108-00013Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation) GBMF3801Natur og Univers, Det Frie Forskningsråd (Natural Sciences, Danish Council for Independent Research) 6108-00013
6 · The paper itself

Abstract

Heterotrophic bacterial diazotrophs (HBDs) are ubiquitous in the pelagic ocean, where they have been predicted to carry out the anaerobic process of nitrogen fixation within low-oxygen microenvironments associated with marine pelagic particles. However, the mechanisms enabling particle colonization by HBDs are unknown. We hypothesized that HBDs use chemotaxis to locate and colonize suitable microenvironments, and showed that a cultivated marine HBD is chemotactic toward amino acids and phytoplankton-derived DOM. Using an in situ chemotaxis assay, we also discovered that diverse HBDs at a coastal site are motile and chemotactic toward DOM from various phytoplankton taxa and, indeed, that the proportion of diazotrophs was up to seven times higher among the motile fraction of the bacterial community compared to the bulk seawater community. Finally, three of four HBD isolates and 16 of 17 HBD metagenome assembled genomes, recovered from major ocean basins and locations along the Australian coast, each encoded >85% of proteins affiliated with the bacterial chemotaxis pathway. These results document the widespread capacity for chemotaxis in diverse and globally relevant marine HBDs. We suggest that HBDs could use chemotaxis to seek out and colonize low-oxygen microenvironments suitable for nitrogen fixation, such as those formed on marine particles. Chemotaxis in HBDs could therefore affect marine nitrogen and carbon biogeochemistry by facilitating nitrogen fixation within otherwise oxic waters, while also altering particle degradation and the efficiency of the biological pump.

Indexed as

CyanobacteriaNitrogen FixationAmino AcidsAustraliaCarbonChemotaxisMembrane Transport ProteinsNitrogenOceans and SeasOxygenPhytoplanktonSeawaterAmino AcidsCarbonMembrane Transport ProteinsNitrogenOxygen

Identifiers

PMID35915168
PMCPMC9561647
OpenAlexW4289222965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.