Evidence map›Paper›PMID 35913660›Full record

ArticleFolia microbiologica2023

Genome sequence and comparative analysis of fungal antagonistic strain Bacillus velezensis LJBV19.

Bo Wang, Bohan Yang, Hang Peng, Jiang Lu, Peining Fu

Abstract read
PubMed Publisher
In one paragraph

Article in Folia microbiologica, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Genomic sequencing of vineyard-isolatedFrontiers in microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. A Novel StrainCells · 2024
    Article
  7. Antagonistic StrainInternational journal of molecular sciences · 2024
    Article
  8. International journal of molecular sciences · 2023
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Bo WangCenter for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Bohan YangCenter for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Hang PengCenter for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Jiang LuCenter for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Peining FuCenter for Viticulture and Enology, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China. fupeining@sjtu.edu.cn.ORCID http://orcid.org/0000-0002-9039-5012
Shanghai Jiao Tong University · CN

Funding

Agriculture Research System of China CARS-29-yc-2Key Technologies Research and Development Program 2018YFD1000301Key Technologies Research and Development Program 2019YFD1002501Science and Technology Commission of Shanghai Municipality 18391900400Shanghai Municipal Agricultural Commission 2021-02-08-00-12-F00751
6 · The paper itself

Abstract

Bacillus species as fungal antagonistic agents have been widely used in the agriculture and considered as safe products for the management of plant pathogens. In this study, we reported the whole genome sequence of strain LJBV19 isolated from grapevine rhizosphere soil. Strain LJBV19 was identified as Bacillus velezensis through morphological, physicochemical, molecular analysis and genome comparison. Bacillus velezensis LJBV19 had a significant inhibitory effect on the growth of Magnaporthe oryzae with an inhibition ratio up to 75.55% and showed broad spectrum of activity against fungal phytopathogens. The 3,973,013-bp circular chromosome with an average GC content of 46.5% consisted of 3993 open reading frames (ORFs), and 3308 ORFs were classified into 19 cluster of orthologous groups of proteins (COG) categories. Genes related to cell wall degrading enzymes were predicted by Carbohydrate-Active enZYmes (CAZy) database and validated at the metabolic level, producing 0.53 ± 0.00 U/mL cellulose, 0.14 ± 0.01 U/mL chitinase, and 0.11 ± 0.01 U/mL chitosanase. Genome comparison confirmed the taxonomic position of LJBV19, conserved genomic structure, and genetic homogeneity. Moreover, 13 gene clusters for biosynthesis of secondary metabolites in LJBV19 genome were identified and two unique clusters (clusters 2 and 12) shown to direct an unknown compound were only present in strain LJBV19. In general, our results will provide insights into the antifungal mechanisms of Bacillus velezensis LJBV19 and further application of the strain.

Indexed as

BacillusGenome, BacterialAntifungal AgentsGenomicsAntifungal AgentsBacillus velezensisComparative genomicsFungal antagonisticGenome sequencingSecondary metabolites

Identifiers

PMID35913660
OpenAlexW4289313582

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.