Evidence map›Paper›PMID 35913152›Full record

ArticleApplied and environmental microbiology2022

Time-Dependent Biosensor Fluorescence as a Measure of Bacterial Arsenic Uptake Kinetics and Its Inhibition by Dissolved Organic Matter.

Hyun Yoon, Andrea Giometto, Martin P Pothier, Xuhui Zhang, Alexandre J Poulain, Matthew C Reid

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Tunable low-rate genomic recombination with Cre-Applied and environmental microbiology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Hyun YoonSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York, USA.
Andrea GiomettoSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York, USA.
Martin P PothierDepartment of Biology, University of Ottawagrid.28046.38, Ottawa, Ontario, Canada.
Xuhui ZhangSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York, USA.
Alexandre J PoulainDepartment of Biology, University of Ottawagrid.28046.38, Ottawa, Ontario, Canada.ORCID 0000-0002-0488-3993
Matthew C ReidSchool of Civil and Environmental Engineering, Cornell University, Ithaca, New York, USA.ORCID 0000-0001-5185-7678
Cornell University · USUniversity of Ottawa · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbe-mediated transformations of arsenic (As) often require As to be taken up into cells prior to enzymatic reaction. Despite the importance of these microbial reactions for As speciation and toxicity, understanding of how As bioavailability and uptake are regulated by aspects of extracellular water chemistry, notably dissolved organic matter (DOM), remains limited. Whole-cell biosensors utilizing fluorescent proteins are increasingly used for high-throughput quantification of the bioavailable fraction of As in water. Here, we present a mathematical framework for interpreting the time series of biosensor fluorescence as a measure of As uptake kinetics, which we used to evaluate the effects of different forms of DOM on uptake of trivalent arsenite. We found that thiol-containing organic compounds significantly inhibited uptake of arsenite into cells, possibly through the formation of aqueous complexes between arsenite and thiol ligands. While there was no evidence for competitive interactions between arsenite and low-molecular-weight neutral molecules (urea, glycine, and glyceraldehyde) for uptake through the aquaglyceroporin channel GlpF, which mediates transport of arsenite across cell membranes, there was evidence that labile DOM fractions may inhibit arsenite uptake through a catabolite repression-like mechanism. The observation of significant inhibition of arsenite uptake at DOM/As ratios commonly encountered in wetland pore waters suggests that DOM may be an important control on the microbial uptake of arsenite in the environment, with aspects of DOM quality playing an important role in the extent of inhibition.

Indexed as

ArsenicArsenitesBiosensing TechniquesWater Pollutants, ChemicalBacteriaDissolved Organic MatterSulfhydryl CompoundsWaterArsenicArsenitesDissolved Organic MatterSulfhydryl CompoundsWaterWater Pollutants, Chemicalarsenicarsenitebioavailabilitybiosensorscomplexationdissolved organic matterkineticsmicrobial uptakemodelingthiols

Identifiers

PMID35913152
PMCPMC9397108
OpenAlexW4289333790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.