Evidence map›Paper›PMID 35912206›Full record

ArticleFrontiers in oncology2022

Identification of a 3-Gene Model as Prognostic Biomarker in Patients With Gastric Cancer.

Siming Xue, Tianjiao Zheng, Juan Yan, Jinmin Ma, Cong Lin, Shichen Dong, Chen Wei, Tong Li, Xiaoyin Zhang, Guibo Li

Open access · goldAbstract read
In one paragraph

Article in Frontiers in oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Siming XueBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Tianjiao ZhengBeijing Genomics Institute (BGl) College & Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Zhengzhou, China.
Juan YanBeijing Genomics Institute (BGl) College & Henan Institute of Medical and Pharmaceutical Sciences, Zhengzhou University, Zhengzhou, China.
Jinmin MaBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Cong LinBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Shichen DongBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Chen WeiBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Tong LiBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
Xiaoyin ZhangDepartment of Gastroenterology, National Clinical Research Center of Infectious Disease, The Third People's Hospital of Shenzhen, The Second Affiliated Hospital of Southern University of Science and Technology, Shenzhen, China.
Guibo LiBeijing Genomics Institute (BGI)-Shenzhen, Shenzhen, China.
BGI Group (China) · CNZhengzhou University · CNSouthern University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Although the incidence of gastric cancer (GC) is decreasing, GC remains one of the leading cancers in the world. Surgical resection, radiotherapy, chemotherapy, and neoadjuvant therapy have advanced, but patients still face the risk of recurrence and poor prognosis. This study provides new insights for assessment of prognosis and postoperative recurrence of GC patients. Methods: We collected paired cancer and adjacent tissues of 17 patients with early primary GC for bulk transcriptome sequencing. By comparing the transcriptome information of cancer and adjacent cancer, 321 differentially expressed genes (DEGs) were identified. These DEGs were further screened and analyzed with the GC cohort of TCGA to establish a 3-gene prognostic model ( Results: The model could divide GC samples from TCGA cohorts into two groups with significant differences in overall and disease-free survival. The excellent predictive ability of this model was also validated in multiple other public data sets. The proportion of these immune cells such as resting mast cells, T cells CD4+ memory activated and Macrophages M2 are significantly different between high and low risk group. Conclusion: These three genes used to build the models were validated as biomarkers for predicting tumor recurrence and survival. They may have potential significance for the treatment and diagnosis of patients in the future, and may also promote the development of targeted drugs.

Indexed as

cox regressiongastric cancerimmune microenvironmentRNA-seqsurvival

Identifiers

PMID35912206
PMCPMC9329618
OpenAlexW4285389355

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.