Evidence map›Paper›PMID 35911955›Full record

ArticleFrontiers in molecular biosciences2022

The Role of Extracellular Loops in the Folding of Outer Membrane Protein X (OmpX) of

Simen Hermansen, David Ryoo, Marcella Orwick-Rydmark, Athanasios Saragliadis, James C Gumbart, Dirk Linke

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular biosciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Recombinant Expression and Overproduction of Transmembrane β-Barrel Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Simen HermansenSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway.
David RyooInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA, United States.
Marcella Orwick-RydmarkSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway.
Athanasios SaragliadisSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway.
James C GumbartSchool of Physics, Georgia Institute of Technology, Atlanta, GA, United States.
Dirk LinkeSection for Genetics and Evolutionary Biology, Department of Biosciences, University of Oslo, Oslo, Norway.
University of Oslo · NOGeorgia Institute of Technology · US

Funding

Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
NIGMS NIH HHS R01 GM123169
6 · The paper itself

Abstract

The outer membrane of Gram-negative bacteria acts as an additional diffusion barrier for solutes and nutrients. It is perforated by outer membrane proteins (OMPs) that function most often as diffusion pores, but sometimes also as parts of larger cellular transport complexes, structural components of the cell wall, or even as enzymes. These OMPs often have large loops that protrude into the extracellular environment, which have promise for biotechnological applications and as therapeutic targets. Thus, understanding how modifications to these loops affect OMP stability and folding is critical for their efficient application. In this work, the small outer membrane protein OmpX was used as a model system to quantify the effects of loop insertions on OMP folding and stability. The insertions were varied according to both hydrophobicity and size, and their effects were determined by assaying folding into detergent micelles

Indexed as

bam complexbeta-barrelextracellular loopsmembrane insertionompxouter membrane proteinprotein folding

Identifiers

PMID35911955
PMCPMC9329534
OpenAlexW4285389542

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.