Evidence map›Paper›PMID 35908139›Full record

ArticleJournal of gastroenterology2022

Omics profiles of fecal and oral microbiota change in irritable bowel syndrome patients with diarrhea and symptom exacerbation.

Yukari Tanaka, Riu Yamashita, Junko Kawashima, Hiroshi Mori, Ken Kurokawa, Shinji Fukuda, Yasuhiro Gotoh, Keiji Nakamura, Tetsuya Hayashi, Yoshiyuki Kasahara and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of gastroenterology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Yukari Tanaka *Department of Gastroenterology, Sendai Kousei Hospital, Sendai, Japan.
Riu Yamashita *Division of Translational Informatics, Exploratory Oncology Research and Clinical Trial Center, National Cancer Center, Chiba, Japan.
Junko KawashimaTohoku Medical Megabank Organization, Tohoku University, Sendai, Japan.
Hiroshi MoriAdvanced Genomics Center, National Institute of Genetics, Shizuoka, Japan.
Ken KurokawaAdvanced Genomics Center, National Institute of Genetics, Shizuoka, Japan.
Shinji FukudaInstitute for Advanced Biosciences, Keio University, Yamagata, Japan.
Yasuhiro GotohDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Keiji NakamuraDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Tetsuya HayashiDepartment of Bacteriology, Faculty of Medical Sciences, Kyushu University, Fukuoka, Japan.
Yoshiyuki KasaharaDepartment of Fetal and Maternal Therapeutics, Tohoku University Graduate School of Medicine, Sendai, Japan.
Yukuto SatoResearch Laboratory Center, Faculty of Medicine, University of the Ryukyus, Nishihara, Okinawa, Japan.
Shin FukudoDepartment of Behavioral Medicine, Tohoku University Graduate School of Medicine, 2-1 Seiryo, Aoba, Sendai, 980-8575, Japan. sfukudo@med.tohoku.ac.jp.ORCID http://orcid.org/0000-0003-2265-0349
Tohoku University · JPKyushu University · JPNational Institute of Genetics · JPChiba Cancer Center · JPUniversity of the Ryukyus · JPUniversity of Tsukuba · JP

Funding

Japan Agency for Medical Research and Development JP21gm1010009Japan Science and Technology Corporation ERATO JPMJER1902Japan Society for the Promotion of Science 16H06279 (PAGS)Japan Society for the Promotion of Science 17K17584Japan Society for the Promotion of Science 19K22589
6 · The paper itself

Abstract

backgroundIrritable bowel syndrome (IBS) is a disorder of gut-brain interaction, including dysregulation of the hypothalamic-pituitary-adrenal axis with salivary cortisol changes. However, the role of gastrointestinal microbiota during IBS symptom exacerbation remains unclear. We tested the hypothesis that the microbial species, gene transcripts, and chemical composition of fecal and oral samples are altered during the exacerbation of IBS symptoms.

methodsFecal, salivary, and dental plaque samples were collected at baseline from 43 men with IBS with diarrhea (IBS-D) and 40 healthy control (HC) men. Samples in the IBS-D patients were also collected during symptom exacerbation. The composition of the fecal microbiota was determined by analyzing the 16S rRNA gene, RNA-based metatranscriptome, and metabolites in samples from HC and IBS patients with and without symptom exacerbation. Oral samples were also analyzed using omics approaches.

resultsThe fecal microbiota during IBS symptom exacerbation exhibited significant differences in the phylogenic pattern and short-chain fatty acid compared with fecal samples during defecation when symptoms were not exacerbated. Although there were no significant differences in the phylogenic pattern of fecal microbiota abundance between HCs and IBS-D patients, significant differences were detected in the expression patterns of bacterial transcriptomes related to butyrate production and neuroendocrine hormones, including tryptophan-serotonin-melatonin synthesis and glutamine/GABA. The composition of plaque microbiota was different between HC and IBS-D patients during normal defecation.

conclusionsOur findings suggest that colonic host-microbial interactions are altered in IBS-D patients during exacerbation of symptoms. There were no overlaps between feces and oral microbiomes.

Indexed as

Irritable Bowel SyndromeMelatoninMicrobiotaButyratesDiarrheaFatty Acids, VolatileFecesgamma-Aminobutyric AcidGlutamineHumansHydrocortisoneHypothalamo-Hypophyseal SystemMalePituitary-Adrenal SystemRNA, Ribosomal, 16SSerotoninButyratesFatty Acids, Volatilegamma-Aminobutyric AcidGlutamineHydrocortisoneMelatoninRNA, Ribosomal, 16SSerotoninTryptophan16S rRNA geneMetabolomeMetatranscriptomeMicrobiome

Identifiers

PMID35908139
PMCPMC9522833
OpenAlexW4288855672

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.