Evidence map›Paper›PMID 35907887›Full record

ArticleScientific reports2022

Identification of Daboia siamensis venome using integrated multi-omics data.

Thammakorn Saethang, Poorichaya Somparn, Sunchai Payungporn, Sira Sriswasdi, Khin Than Yee, Kenneth Hodge, Mark A Knepper, Lawan Chanhome, Orawan Khow, Narongsak Chaiyabutr and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Thammakorn Saethang *Department of Computer Science, Faculty of Science, Kasetsart University, Bangkok, 10900, Thailand. thammakorn.s@ku.th.
Poorichaya Somparn *Center of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Sunchai PayungpornResearch Unit of Systems Microbiology, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Sira SriswasdiCenter of Excellence in Computational Molecular Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Khin Than YeeChemical Toxicology Research Division, Department of Medical Research, Ministry of Health, Yangon, 11191, Myanmar.
Kenneth HodgeCenter of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand.
Mark A KnepperEpithelial Systems Biology Laboratory, NHLBI, National Institutes of Health, Bethesda, MD, USA.
Lawan ChanhomeQueen Saovabha Memorial Institute, The Thai Red Cross Society, Bangkok, 10330, Thailand.
Orawan KhowQueen Saovabha Memorial Institute, The Thai Red Cross Society, Bangkok, 10330, Thailand.
Narongsak ChaiyabutrQueen Saovabha Memorial Institute, The Thai Red Cross Society, Bangkok, 10330, Thailand.
Visith SitprijaQueen Saovabha Memorial Institute, The Thai Red Cross Society, Bangkok, 10330, Thailand.
Trairak PisitkunCenter of Excellence in Systems Biology, Faculty of Medicine, Chulalongkorn University, Bangkok, 10330, Thailand. pisitkut@nhlbi.nih.gov.
Chulalongkorn University · THQueen Saovabha Memorial Institute · THThai Red Cross Society · THKasetsart University · THMinistry of Health · MMNational Heart Lung and Blood Institute · USNational Institutes of Health · US

Funding

Solute And Water Transport In Renal EpitheliaZIAHL001285 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KNEPPER, MARK · 2009 to 2025
$34.9M
Computational Tools for ProteomicsZIAHL006129 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KNEPPER, MARK · 2011 to 2025
$8.1M
6 · The paper itself

Abstract

Snakebite, classified by World Health Organization as a neglected tropical disease, causes more than 100,000 deaths and 2 million injuries per year. Currently, available antivenoms do not bind with strong specificity to target toxins, which means that severe complications can still occur despite treatment. Moreover, the cost of antivenom is expensive. Knowledge of venom compositions is fundamental for producing a specific antivenom that has high effectiveness, low side effects, and ease of manufacture. With advances in mass spectrometry techniques, venom proteomes can now be analyzed in great depth at high efficiency. However, these techniques require genomic and transcriptomic data for interpreting mass spectrometry data. This study aims to establish and incorporate genomics, transcriptomics, and proteomics data to study venomics of a venomous snake, Daboia siamensis. Multiple proteins that have not been reported as venom components of this snake such as hyaluronidase-1, phospholipase B, and waprin were discovered. Thus, multi-omics data are advantageous for venomics studies. These findings will be valuable not only for antivenom production but also for the development of novel therapeutics.

Indexed as

DaboiaSnake BitesAnimalsAntiveninsProteomeProteomicsSnakesVenomsAntiveninsProteomeVenoms

Identifiers

PMID35907887
PMCPMC9338987
OpenAlexW4288801550

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.