Evidence map›Paper›PMID 35907402›Full record

ArticleStructure (London, England : 1993)2022

Cryo-EM structures of human fucosidase FucA1 reveal insight into substrate recognition and catalysis.

Zachary Armstrong, Richard W Meek, Liang Wu, James N Blaza, Gideon J Davies

Open access · hybridAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. A Robust α-l-Fucosidase fromACS chemical biology · 2024
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Zachary ArmstrongDepartment of Chemistry, Structural Biology Laboratory, University of York, Heslington, York YO10 5DD, UK.
Richard W MeekDepartment of Chemistry, Structural Biology Laboratory, University of York, Heslington, York YO10 5DD, UK.
Liang WuDepartment of Chemistry, Structural Biology Laboratory, University of York, Heslington, York YO10 5DD, UK; The Rosalind Franklin Institute, Harwell Campus, Didcot OX11 0FA, UK.
James N BlazaDepartment of Chemistry, Structural Biology Laboratory, University of York, Heslington, York YO10 5DD, UK.
Gideon J DaviesDepartment of Chemistry, Structural Biology Laboratory, University of York, Heslington, York YO10 5DD, UK. Electronic address: gideon.davies@york.ac.uk.
University of York · GBRosalind Franklin Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BB/R001162/1Medical Research Council MR/T040742/1Wellcome TrustWellcome Trust 206161/Z/17/ZWellcome Trust 218579/Z/19/Z
6 · The paper itself

Abstract

Enzymatic hydrolysis of α-L-fucose from fucosylated glycoconjugates is consequential in bacterial infections and the neurodegenerative lysosomal storage disorder fucosidosis. Understanding human α-L-fucosidase catalysis, in an effort toward drug design, has been hindered by the absence of three-dimensional structural data for any animal fucosidase. Here, we have used cryoelectron microscopy (cryo-EM) to determine the structure of human lysosomal α-L-fucosidase (FucA1) in both an unliganded state and in complex with the inhibitor deoxyfuconojirimycin. These structures, determined at 2.49 Å resolution, reveal the homotetrameric structure of FucA1, the architecture of the catalytic center, and the location of both natural population variations and disease-causing mutations. Furthermore, this work has conclusively identified the hitherto contentious identity of the catalytic acid/base as aspartate-276, representing a shift from both the canonical glutamate acid/base residue and a previously proposed glutamate residue. These findings have furthered our understanding of how FucA1 functions in both health and disease.

Indexed as

alpha-L-FucosidaseFucoseAspartic AcidCatalysisCryoelectron MicroscopyGlutamatesGlycoconjugatesHumansalpha-L-FucosidaseAspartic AcidFUCA1 protein, humanFucoseGlutamatesGlycoconjugatescarbohydrate active enzymescryo-EMFucA1fucosidasefucosidosisglycansglycobiologylysosomal storage diseases

Identifiers

PMID35907402
PMCPMC9548408
OpenAlexW4288734200

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.