Evidence map›Paper›PMID 35907265›Full record

SynthesisJournal of Crohn's & colitis2023

Chromosomal Numerical Aberrations and Rare Copy Number Variation in Patients with Inflammatory Bowel Disease.

Paulina Dirvanskyte, Bhaskar Gurram, Chrissy Bolton, Neil Warner, Kelsey D J Jones, Helen R Griffin, Genomics England Research Consortium, Jason Y Park, Klaus-Michael Keller, Kimberly C Gilmour and 4 more

Open access · hybridAbstract readSystematic ReviewMeta-Analysis
In one paragraph

Synthesis in Journal of Crohn's & colitis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Review
  4. Review
  5. Lifelong medical challenges and immunogenetics of Turner syndrome.Clinical and experimental pediatrics · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 4 countries.

Paulina DirvanskyteTranslational Gastroenterology Unit and Biomedical Research Centre, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Bhaskar GurramDepartment of Pediatrics, UT Southwestern Medical Center, Dallas TX, USA.
Chrissy BoltonInstitute of Child Health, University College London, London, UK.ORCID 0000-0003-0240-3244
Neil WarnerSickKids Inflammatory Bowel Disease Centre, Hospital for Sick Children, Toronto, ON, Canada.
Kelsey D J JonesPaediatric Gastroenterology Department, Great Ormond Street Hospital for Children NHS Foundation Trust, London, UK.
Helen R GriffinPrimary Immunodeficiency Group, Newcastle University Translational and Clinical Research Institute, Newcastle upon Tyne, UK.
Genomics England Research Consortium
Jason Y ParkDepartment of Pathology and the Eugene McDermott Center for Human Growth and Development. UT Southwestern Medical Center, Dallas, TX, USA.ORCID 0000-0001-6797-4000
Klaus-Michael KellerGerman Clinic for Diagnostics [DKD], Helios Klinik, Wiesbaden, Germany.
Kimberly C GilmourLaboratory of Immunology and Cellular Therapy, Great Ormond Street Hospital for Children, NHS Foundation Trust, London, UK.
Sophie HambletonPrimary Immunodeficiency Group, Newcastle University Translational and Clinical Research Institute, Newcastle upon Tyne, UK.
Aleixo M MuiseSickKids Inflammatory Bowel Disease Centre, Hospital for Sick Children, Toronto, ON, Canada.ORCID 0000-0001-9624-3346
Christian WysockiDepartment of Pediatrics, and Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Holm H UhligTranslational Gastroenterology Unit and Biomedical Research Centre, Nuffield Department of Clinical Medicine, University of Oxford, Oxford, UK.
Great Ormond Street Hospital for Children NHS Foundation Trust · GBNewcastle University · GBSouthwestern Medical CenterHelios Kliniken · DEJohn Radcliffe Hospital · GBSickKids Foundation · CAThe University of Texas Southwestern Medical Center · USUniversity of Oxford · GBUniversity of Toronto · CA

Funding

COngenital Diarrhea and Enteropathy (PediCODE) Consortium and BioRepositoryRC2DK118640 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI James Richard Goldenring, Izumi Kaji · 2019 to 2026
$14.8M
Identifying Immune and Epithelial Network Signatures in Very Early Onset Inflammatory Bowel DiseaseRC2DK122532 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI KLEIN, CHRISTOPH, MUISE, ALEIXO M · 2020 to 2024
$9.1M
Cancer Research UKCIHRMedical Research CouncilNIDDK NIH HHS RC2 DK118640NIDDK NIH HHS RC2 DK122532NIH HHS RC2DK118640Wellcome Trust 207556/Z/17/Z
6 · The paper itself

Abstract

BACKGROUND AND

aimsInflammatory bowel diseases [IBD] have a complex polygenic aetiology. Rare genetic variants can cause monogenic intestinal inflammation. The impact of chromosomal aberrations and large structural abnormalities on IBD susceptibility is not clear. We aimed to comprehensively characterise the phenotype and prevalence of patients with IBD who possess rare numerical and structural chromosomal abnormalities.

methodsWe performed a systematic literature search of databases PubMed and Embase; and analysed gnomAD, Clinvar, the 100 000 Genomes Project, and DECIPHER databases. Further, we analysed international paediatric IBD cohorts to investigate the role of IL2RA duplications in IBD susceptibility.

resultsA meta-analysis suggests that monosomy X [Turner syndrome] is associated with increased expressivity of IBD that exceeds the population baseline (1.86%, 95% confidence interval [CI] 1.48 to 2.34%) and causes a younger age of IBD onset. There is little evidence that Klinefelter syndrome, Trisomy 21, Trisomy 18, mosaic Trisomy 9 and 16, or partial trisomies contribute to IBD susceptibility. Copy number analysis studies suggest inconsistent results. Monoallelic loss of X-linked or haploinsufficient genes is associated with IBD by hemizygous or heterozygous deletions, respectively. However, haploinsufficient gene deletions are detected in healthy reference populations, suggesting that the expressivity of IBD might be overestimated. One duplication that has previously been identified as potentially contributing to IBD risk involves the IL2RA/IL15R loci. Here we provide additional evidence that a microduplication of this locus may predispose to very-early-onset IBD by identifying a second case in a distinct kindred. However, the penetrance of intestinal inflammation in this genetic aberration is low [<2.6%].

conclusionsTurner syndrome is associated with increased susceptibility to intestinal inflammation. Duplication of the IL2RA/IL15R loci may contribute to disease risk.

Indexed as

Inflammatory Bowel DiseasesTurner SyndromeChromosome AberrationsDNA Copy Number VariationsHumansInflammation

Identifiers

PMID35907265
PMCPMC9880952
OpenAlexW4288855514

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.