Evidence map›Paper›PMID 35906644›Full record

ArticleBMC veterinary research2022

Molecular characterization of a novel subgenotype of lumpy skin disease virus strain isolated in Inner Mongolia of China.

Xiaohui Zan, Haibi Huang, Yu Guo, Dongdong Di, Cun Fu, Shirong Wang, Youzhi Wu, Jialei Wang, Yan Wang, Yanhua Ma and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Xiaohui Zan *State Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Haibi Huang *JINYU Biological Pharmaceutical Co., Ltd, Hohhot, China.
Yu Guo *Inner Mongolia Autonomous Region Animal Disease Prevention and Control Center, Hohhot, China.
Dongdong Di *JINYU Biological Pharmaceutical Co., Ltd, Hohhot, China.
Cun FuState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Shirong WangState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Youzhi WuState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Jialei WangState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Yan WangState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Yanhua MaState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Chunxia ChaiState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China.
Rui SuBeijing Boshi Biotech Co.Ltd, Beijing, China.
Qingqing SongJINYU Biological Pharmaceutical Co., Ltd, Hohhot, China. 280413215@qq.com.
Wei WangState Key Laboratory of Reproductive Regulation & breeding of grassland livestock, School of Life Sciences, Inner Mongolia University, Hohhot, China. wangwei@imu.edu.cn.
Inner Mongolia University · CNInner Mongolia Comprehensive Disease Prevention and Control Center · CNInner Mongolia Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe outbreak of Lumpy skin disease (LSD) in cattle caused by LSD virus (LSDV) was first reported in August 2019 in China. Since then, several LSD outbreaks have been reported in seven different provinces of China. Until now, several Lumpy skin disease virus (LSDV) strains from China have been reported and sequenced including LSDV/Xinjiang/2019 (MN598005.1), China/GD01/2020 (MW355944.1), and LSDV/Hongkong/2021 (MW732649.1). In October 2020, more than 1,700 cattle imported from Chile arrived in Xilingol, Inner Mongolia, and were diagnosed with LSD. Currently, limited data on the origin of the virus is available.

methodsNucleotide sequences of the ORF11, ORF36, ORF74, ORF117, ORF126 genes and the complete genome of LSDV strains and isolates were downloaded from NCBI database. MEGA7.0 was used to perform phylogenetic analysis with Neighbor-Joining (NJ). DNASTAR software is used to analyze homologous comparison analysis with related genes of reference strains included in Genbank.

resultsCompared with other strains isolated from China, the results of full genome sequence analysis showed the LSDV/NMG/2020 strain belonged to the recombinant strains. The LSDV/NMG/2020 strain is different from the current LSDV field isolates in Africa, the Middle East, Europe, and the newly emerged LSDV Russia variants. Based on the identities of P32, RPO30, EEV, GPCR and LSDV117 genes (99.8%, 99%, 99.8%, 99% and 98.7%), the sub-cluster recombinant containing LSDV/NMG/2020 strain is phylogenetically closer to the Russia strain (Saratov/2017).

conclusionsIn this study, we reported a new isolated LSDV strain named LSDV/NMG/2020. The results of genomic characterization and phylogenetic analysis demonstrated that the LSDV/NMG/2020 isolate was a vaccine-like recombinant strain.

Indexed as

Cattle DiseasesLumpy Skin DiseaseLumpy skin disease virusAnimalsCattleDisease OutbreaksPhylogenyLumpy skin disease virusMolecular characterizationRecombination

Identifiers

PMID35906644
PMCPMC9335961
OpenAlexW4288535808

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.