Evidence map›Paper›PMID 35906548›Full record

ArticleBMC cardiovascular disorders2022

Role of ferroptosis-related genes in coronary atherosclerosis and identification of key genes: integration of bioinformatics analysis and experimental validation.

Qingwen Meng, Yiqian Xu, Xuebin Ling, Huajiang Liu, Shun Ding, Haolin Wu, Dongming Yan, Xingyue Fang, Tianfa Li, Qibing Liu

Open access · goldAbstract read
In one paragraph

Article in BMC cardiovascular disorders, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Qingwen Meng *Deparment of Cardiology, The First Affiliated Hospital of Hainan Medical University, Haikou, 570100, China.
Yiqian Xu *Department of Pharmacology, Hainan Medical University, Haikou, 570100, China.
Xuebin Ling *Deparment of Cardiology, The First Affiliated Hospital of Hainan Medical University, Haikou, 570100, China.
Huajiang LiuDeparment of Cardiology, The First Affiliated Hospital of Hainan Medical University, Haikou, 570100, China.
Shun DingDepartment of Pharmacology, Hainan Medical University, Haikou, 570100, China.
Haolin WuDepartment of Pharmacology, Hainan Medical University, Haikou, 570100, China.
Dongming YanDepartment of Pharmacology, Hainan Medical University, Haikou, 570100, China.
Xingyue FangDeparment of Cardiology, The First Affiliated Hospital of Hainan Medical University, Haikou, 570100, China.
Tianfa LiDeparment of Cardiology, The First Affiliated Hospital of Hainan Medical University, Haikou, 570100, China. 2223084306@qq.com.
Qibing LiuDepartment of Pharmacology, Hainan Medical University, Haikou, 570100, China. qibing.liu@hainmc.edu.cn.
Hainan Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCoronary atherosclerosis (CA) is the most common type of atherosclerosis. However, the inherent pathogenesis and mechanisms of CA are unclear, and the relationship with ferroptosis-related genes (FRGs) has not been reported. The purpose of this study was to use bioinformatics techniques to evaluate potential therapeutic targets for CA.Please provide the given name for author "Dingshun".Please provide the given name for author "Dingshun".

methodsFirst, the GSE132651 dataset was acquired from the Gene Expression Omnibus database. Gene Ontology enrichment analysis, Kyoto Encyclopedia of Genes and Genomes enrichment analysis, and Protein-Protein interaction network were successively conducted. Next, overlapping genes between hub genes and CA genes were found. FRGs were found when comparing the CA group with the normal group. The correlation between overlapping genes and FRGs was further analyzed. At last, we performed Elisa to validate the expression of these genes in human blood specimens. Mice aortic tissues were used for western blot to detect the expression of proteins.

resultsBased on the GSE132651 dataset, 102 differentially expressed genes were identified. Five overlapping genes between hub genes and CA genes were found (CCNA2, RRM2, PBK, PCNA, CDK1). TFRC and GPX4 were found to be FRGs. TFRC was positively correlated with CCNA2, PBK, PCNA, CDK1, RRM2, with CDK1 being the strongest correlation. GPX4 was negatively correlated with these genes, among which CCNA2 was the strongest correlation. The ELISA results showed that CCNA2, CDK1, and TFRC expression were markedly increased in serum of the CA samples compared with controls, while GPX4 expression was markedly decreased in the CA samples. The western blot results show that GPX4 expression was lower in the model group, TFRC, CDK1, and CCNA2 protein expression were high in the model group.

conclusionsFerroptosis-related genes GPX4 and TFRC were closely correlated with the identified overlapping genes CCNA2 and CDK1, which may serve as targeted therapies for the treatment of CA.

Indexed as

Coronary Artery DiseaseFerroptosisAnimalsComputational BiologyHumansMiceProliferating Cell Nuclear AntigenProliferating Cell Nuclear AntigenBioinformatics analysisCoronary atherosclerosisFerroptosisOverlapping genes

Identifiers

PMID35906548
PMCPMC9338511
OpenAlexW4288715284

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.