Evidence map›Paper›PMID 35906291›Full record

ReviewNature protocols2022

A rapid screening platform to coculture bacteria within tumor spheroids.

Tetsuhiro Harimoto, Dhruba Deb, Tal Danino

Abstract readReview
In one paragraph

Review in Nature protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Review
  2. Toward development of soil-derivedBiodesign research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Tetsuhiro HarimotoDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0001-8859-7494
Dhruba DebDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0003-4828-4623
Tal DaninoDepartment of Biomedical Engineering, Columbia University, New York, NY, USA. tal.danino@columbia.edu.ORCID http://orcid.org/0000-0003-2713-7659

Funding

Engineering S. typhimurium for metastatic colorectal cancerR01EB029750 · NIBIB · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DANINO, TAL · 2020 to 2024
$1.4M
Engineering tumor-targeting bacteria to sense and deliver therapeuticsF99CA253756 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HARIMOTO, TETSUHIRO · 2020 to 2021
$92k
NCI NIH HHS F99 CA253756NIBIB NIH HHS R01 EB029750
6 · The paper itself

Abstract

The prevalence of tumor-colonizing bacteria along with advances in synthetic biology are leading to a new generation of living microbial cancer therapies. Because many bacterial systems can be engineered to recombinantly produce therapeutics within tumors, simple and high-throughput experimental platforms are needed to screen the large collections of bacteria candidates and characterize their interactions with cancer cells. Here, we describe a protocol to selectively grow bacteria within the core of tumor spheroids, allowing for their continuous and parallel profiling in physiologically relevant conditions. Specifically, tumor spheroids are incubated with bacteria in a 96-well low-adhesion plate followed by a series of washing steps and an antibiotic selection protocol to confine bacterial growth within the hypoxic and necrotic core of tumor spheroids. This bacteria spheroid coculture (BSCC) system is stable for over 2 weeks, does not require specialized equipment and is compatible with time-lapse microscopy, commercial staining assays and histology that uniquely enable analysis of growth kinetics, viability and spatial distribution of both cellular populations, respectively. We show that the procedure is applicable to multiple tumor cell types and bacterial species by varying protocol parameters and is validated by using animal models. The BSCC platform will allow the study of bacteria-tumor interactions in a continuous manner and facilitate the rapid development of engineered microbial therapies.

Indexed as

NeoplasmsSpheroids, CellularAnimalsAnti-Bacterial AgentsBacteriaCell Line, TumorCoculture TechniquesDrug Screening Assays, AntitumorHigh-Throughput Screening AssaysAnti-Bacterial Agents

Identifiers

PMID35906291
PMCPMC10332800

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.