Evidence map›Paper›PMID 35902889›Full record

ArticleMicrobiome2022

Long-term nitrogen deposition enhances microbial capacities in soil carbon stabilization but reduces network complexity.

Xingyu Ma, Tengxu Wang, Zhou Shi, Nona R Chiariello, Kathryn Docherty, Christopher B Field, Jessica Gutknecht, Qun Gao, Yunfu Gu, Xue Guo and 8 more

Erratum issuedOpen access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Microbiome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
11.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 93 citations in OpenAlex.

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  7. Increasing pesticide diversity impairs soil microbial functions.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 12 institutions in 4 countries.

Xingyu Ma *State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
Tengxu Wang *State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
Zhou ShiInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.
Nona R ChiarielloDepartment of Global Ecology, Carnegie Institution for Science, Stanford, CA, 94305, USA.
Kathryn DochertyDepartment of Biological Sciences, Western Michigan University, Kalamazoo, MI, 49008, USA.
Christopher B FieldDepartment of Global Ecology, Carnegie Institution for Science, Stanford, CA, 94305, USA.
Jessica GutknechtDepartment of Soil Ecology, Helmholtz Centre for Environmental Research - UFZ, 06120, Halle, Germany.
Qun GaoState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
Yunfu GuDepartment of Microbiology, College of Resource, Sichuan Agricultural University, Chengdu, 611130, China.
Xue GuoState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
Bruce A HungateCenter for Ecosystem Science and Society, and Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86011, USA.
Jiesi LeiState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China.
Audrey NiboyetSorbonne Université, Université Paris Cité, UPEC, CNRS, INRAE, IRD, Institut d'Ecologie et des Sciences de l'Environnement de Paris, iEES-Paris, Paris, France.
Xavier Le RouxMicrobial Ecology Centre LEM, INRAE, CNRS, University of Lyon, University Lyon 1, VetAgroSup, UMR INRAE 1418, 43 boulevard du 11 novembre 1918, 69622, Villeurbanne, France.
Mengting YuanInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.
Tong YuanInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA.
Jizhong ZhouInstitute for Environmental Genomics and Department of Microbiology and Plant Biology, University of Oklahoma, Norman, OK, 73019, USA. jzhou@ou.edu.
Yunfeng YangState Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, 100084, China. yangyf@tsinghua.edu.cn.
Tsinghua University · CNCarnegie Institution for Science · USState Key Joint Laboratory of Environment Simulation and Pollution Control · CNUniversity of Oklahoma · USBiotechnology Institute · USInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FRLawrence Berkeley National Laboratory · USNorthern Arizona University · USSichuan Agricultural University · CNUniversité Claude Bernard Lyon 1 · FRUniversity of California, Berkeley · USWestern Michigan University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAnthropogenic activities have increased the inputs of atmospheric reactive nitrogen (N) into terrestrial ecosystems, affecting soil carbon stability and microbial communities. Previous studies have primarily examined the effects of nitrogen deposition on microbial taxonomy, enzymatic activities, and functional processes. Here, we examined various functional traits of soil microbial communities and how these traits are interrelated in a Mediterranean-type grassland administrated with 14 years of 7 g m

resultsSoil microbial communities were significantly altered by N deposition. Consistent with higher aboveground plant biomass and litter, fast-growing bacteria, assessed by abundance-weighted average rRNA operon copy number, were favored in N deposited soils. The relative abundances of genes associated with labile carbon (C) degradation (e.g., amyA and cda) were also increased. In contrast, the relative abundances of functional genes associated with the degradation of more recalcitrant C (e.g., mannanase and chitinase) were either unchanged or decreased. Compared with the ambient control, N deposition significantly reduced network complexity, such as average degree and connectedness. The network for N deposited samples contained only genes associated with C degradation, suggesting that C degradation genes became more intensely connected under N deposition.

conclusionsWe propose a conceptual model to summarize the mechanisms of how changes in above- and belowground ecosystems by long-term N deposition collectively lead to more soil C accumulation. Video Abstract.

Indexed as

MicrobiotaSoilCarbonEcosystemNitrogenSoil MicrobiologyCarbonNitrogenSoilGeoChipGlobal changeHigh-throughput sequencingNitrogen depositionSoil microbial community

Identifiers

PMID35902889
PMCPMC9330674
OpenAlexW4288074270

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.