Evidence map›Paper›PMID 35902420›Full record

ArticleJournal of clinical immunology2022

TREC/KREC Newborn Screening followed by Next-Generation Sequencing for Severe Combined Immunodeficiency in Japan.

Manabu Wakamatsu, Daiei Kojima, Hideki Muramatsu, Yusuke Okuno, Shinsuke Kataoka, Fumiko Nakamura, Yoshimi Sakai, Ikuya Tsuge, Tsuyoshi Ito, Kazuto Ueda and 10 more

Abstract read
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In one paragraph

Article in Journal of clinical immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Pooled it
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  4. Optimizing TREC- and KREC-based newborn screening: Risk-stratified algorithms significantly reduce referrals.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2026
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  17. Centralized rapid genetic diagnosis of combined immunodeficiency in Japan.Pediatrics international : official journal of the Japan Pediatric Society
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 1 country.

Manabu WakamatsuDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.ORCID 0000-0003-0364-5886
Daiei KojimaDepartment of Pediatrics, Ogaki Municipal Hospital, Ogaki, Japan.
Hideki MuramatsuDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan. hideki-muramatsu@med.nagoya-u.ac.jp.
Yusuke OkunoDepartment of Virology, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Shinsuke KataokaDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Fumiko NakamuraDepartment of Clinical Laboratory, Aichi Health Promotion Foundation, Nagoya, Japan.
Yoshimi SakaiDepartment of Clinical Laboratory, Aichi Health Promotion Foundation, Nagoya, Japan.
Ikuya TsugeDepartment of Pediatrics, School of Medicine, Fujita Health University, Toyoake, Japan.
Tsuyoshi ItoDepartment of Pediatrics, Toyohashi Municipal Hospital, Toyohashi, Japan.
Kazuto UedaDivision of Neonatology, Center for Maternal-Neonatal Care, Nagoya University Hospital, Nagoya, Japan.
Akiko SaitoDivision of Neonatology, Center for Maternal-Neonatal Care, Nagoya University Hospital, Nagoya, Japan.
Eiji MorihanaDepartment of Neonatology, Aichi Children's Health and Medical Center, Obu, Japan.
Yasuhiko ItoDepartment of Pediatrics, Nagoya City University West Medical Center, Nagoya, Japan.
Naoki OhashiDepartment of Paediatric Cardiology, Chukyo Children Heart Centre, Japan, Community Health Care Organization Chukyo Hospital, Nagoya, Japan.
Makito TanakaDepartment of Pediatrics, School of Medicine, Fujita Health University, Toyoake, Japan.
Taihei TanakaDepartment of Pediatrics, Japanese Red Cross Aichi Medical Center Nagoya Daini Hospital, Nagoya, Japan.
Seiji KojimaDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Yoko NakajimaDepartment of Pediatrics, School of Medicine, Fujita Health University, Toyoake, Japan.
Tetsuya ItoDepartment of Pediatrics, School of Medicine, Fujita Health University, Toyoake, Japan.
Yoshiyuki TakahashiDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan. ytakaha@med.nagoya-u.ac.jp.
Fujita Health University · JPNagoya University · JPAichi Health Promotion Foundation · JPNagoya City University · JPNagoya University Hospital · JPChukyo Hospital · JPJapanese Red Cross Nagoya Daini Hospital · JPOgaki Municipal Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe aim of this study is to evaluate the usefulness of T cell receptor excision circle (TREC) and/or kappa-deleting recombination excision circle (KREC) measurements integrated with diagnostic next-generation sequencing (NGS) analysis using a severe combined immunodeficiency (SCID) newborn screening (NBS) program.

methodsTREC and/or KREC values were measured in 137,484 newborns between April 2017 and December 2021 using EnLite TREC (n = 80,791) or TREC/KREC kits (n = 56,693). For newborns with positive screening results, diagnostic NGS analysis was performed with a 349-gene panel to detect genetic mutations associated with primary immunodeficiencies (PIDs).

resultsA total of 145 newborns (0.11%) had abnormal TREC and/or KREC values, and a genetic diagnosis was established in 2 patients with SCID (1 in 68,742 newborns) (IL2RG-SCID and reticular dysgenesis) and 10 with non-SCID PIDs with T and/or B cell deficiencies (1 in 13,748 newborns) using NGS analysis. Furthermore, TREC values of 2849 newborns were measured and confirmed the significant correlation between the results of both TREC and TREC/KREC kits (P < 0.001) and naïve T cell counts.

conclusionsWe performed the first large-scale TREC and TREC/KREC NBS programs in Japan. Our NBS programs followed by the diagnostic NGS analysis for newborns with abnormal TREC and/or KREC values are useful for the early identification and rapid molecular evaluation of not only SCID but also different non-SCID PIDs.

Indexed as

Severe Combined ImmunodeficiencyDNAHigh-Throughput Nucleotide SequencingHumansInfant, NewbornJapanNeonatal ScreeningReceptors, Antigen, T-CellT-LymphocytesDNAReceptors, Antigen, T-CellKappa-deleting recombination excision circleNewborn screeningNext-generation sequencingSevere combined immunodeficiencyT cell receptor excision circle

Identifiers

PMID35902420
OpenAlexW4288384310

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.