Evidence map›Paper›PMID 35899418›Full record

ArticleMolecular ecology resources2023

Environmental DNA methylation of Lymnaea stagnalis varies with age and is hypermethylated compared to tissue DNA.

Beilun Zhao, Peter M van Bodegom, Krijn B Trimbos

Abstract read
In one paragraph

Article in Molecular ecology resources, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. DNA Methylation Machinery in Gastropod Mollusks.Life (Basel, Switzerland) · 2024
    Review
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Beilun ZhaoDepartment of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands.ORCID https://orcid.org/0000-0003-1495-9717
Peter M van BodegomDepartment of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands.
Krijn B TrimbosDepartment of Environmental Biology, Institute of Environmental Sciences, Leiden University, Leiden, The Netherlands.ORCID https://orcid.org/0000-0001-5280-6434

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental DNA (eDNA) approaches contributing to species identifications are quickly becoming the new norm in biomonitoring and ecosystem assessments. Yet, information such as age and health state of the population, which is vital to species biomonitoring, has not been accessible from eDNA. DNA methylation has the potential to provide such information on the state of a population. Here, we measured the methylation of eDNA along with tissue DNA (tDNA) of Lymnaea stagnalis at four life stages. We demonstrate that eDNA methylation varies with age and allows distinguishing among age classes. Moreover, eDNA was globally hypermethylated in comparison to tDNA. This difference was age-specific and connected to a limited number of eDNA sites. This differential methylation pattern suggests that eDNA release with age is partially regulated through DNA methylation. Our findings help to understand mechanisms involved in eDNA release and shows the potential of eDNA methylation analysis to assess age classes. Such age class assessments will encourage future eDNA studies to assess fundamental processes of population dynamics and functioning in ecology, biodiversity conservation and impact assessments.

Indexed as

DNA, EnvironmentalAnimalsBiodiversityDNADNA Barcoding, TaxonomicDNA MethylationEcosystemEnvironmental MonitoringLymnaeaDNADNA, Environmentalage assessmentaquatic biomonitoringeDNA methylationeDNA release mechanismenvironmental DNA

Identifiers

PMID35899418
PMCPMC10087510

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.