Evidence map›Paper›PMID 35896746›Full record

ArticleNature2022

Recording gene expression order in DNA by CRISPR addition of retron barcodes.

Santi Bhattarai-Kline, Sierra K Lear, Chloe B Fishman, Santiago C Lopez, Elana R Lockshin, Max G Schubert, Jeff Nivala, George M Church, Seth L Shipman

Abstract read
In one paragraph

Article in Nature, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Genomic repeats for single-cell molecular recording.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Santi Bhattarai-KlineGladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.
Sierra K LearGladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-7410-9688
Chloe B FishmanGladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.ORCID http://orcid.org/0000-0002-4698-4469
Santiago C LopezGladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA.
Elana R LockshinDepartment of Neurobiology, Duke University Medical Center, Durham, NC, USA.
Max G SchubertDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Jeff NivalaPaul G. Allen School of Computer Science & Engineering, University of Washington, Seattle, WA, USA.
George M ChurchDepartment of Genetics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-3535-2076
Seth L ShipmanGladstone Institute of Data Science and Biotechnology, San Francisco, CA, USA. seth.shipman@gladstone.ucsf.edu.ORCID http://orcid.org/0000-0003-3130-8043

Funding

Engineered Mitochondria for Therapeutic Donation and Mitochondrial Genome EditingDP2GM140917 · NIGMS · J. DAVID GLADSTONE INSTITUTES · PI SHIPMAN, SETH LAWLER · 2020 to 2020
$2.8M
NIGMS NIH HHS DP2 GM140917
6 · The paper itself

Abstract

Biological processes depend on the differential expression of genes over time, but methods to make physical recordings of these processes are limited. Here we report a molecular system for making time-ordered recordings of transcriptional events into living genomes. We do this through engineered RNA barcodes, based on prokaryotic retrons

Indexed as

CRISPR-Cas SystemsDNAGene EditingGene ExpressionInformation Storage and RetrievalReverse TranscriptionRNAGenomeIntegrasesProkaryotic CellsTime FactorsDNAIntegrasesRNA

Identifiers

PMID35896746
PMCPMC9357182

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.