Evidence map›Paper›PMID 35896550›Full record

ArticleNature communications2022

Actin nano-architecture of phagocytic podosomes.

J Cody Herron, Shiqiong Hu, Takashi Watanabe, Ana T Nogueira, Bei Liu, Megan E Kern, Jesse Aaron, Aaron Taylor, Michael Pablo, Teng-Leong Chew and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Directly adopting inverse biosensors to image live cell enzyme activities in nanodomains.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Podosomes and Mechanical Force.Results and problems in cell differentiation · 2026
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Mesenchymal Migration on Adhesive-Nonadhesive Alternate Surfaces in Macrophages.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

J Cody Herron *Curriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0001-6240-9950
Shiqiong Hu *Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Takashi Watanabe *Department of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Ana T NogueiraDepartment of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Bei LiuDepartment of Pharmacology, School of Medicine, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0001-5979-3082
Megan E KernDepartment of Physics and Astronomy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Jesse AaronAdvanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.ORCID 0000-0002-7543-9590
Aaron TaylorAdvanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.
Michael PabloDepartment of Chemistry, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID 0000-0001-9738-8109
Teng-Leong ChewAdvanced Imaging Center, Howard Hughes Medical Institute Janelia Research Campus, Ashburn, VA, USA.ORCID 0000-0002-3139-7560
Timothy C ElstonCurriculum in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. telston@med.unc.edu.ORCID 0000-0002-4601-2117
Klaus M HahnComputational Medicine Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. khahn@med.unc.edu.ORCID 0000-0002-1970-7562
University of North Carolina at Chapel Hill · USHoward Hughes Medical Institute · US

Funding

UNC Neuroscience Center Research Cores: MicroscopyP30NS045892 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ZYLKA, MARK J. · 2003 to 2022
$11.5M
Preclinical CoreU54HD079124 · NICHD · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MOY, SHERYL S · 2013 to 2019
$8.0M
Dissecting signaling in vivo via precise control and visualization of protein activityR35GM122596 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Klaus M. Hahn · 2017 to 2026
$7.4M
MOLECULAR AND CELLULAR BIOPHYSICS TRAINING PROGRAMT32GM008570 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A, SLEP, KEVIN C · 1995 to 2022
$5.1M
Multiscale Modeling of Wound HealingU01EB018816 · NIBIB · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI HAUGH, JASON M. · 2014 to 2021
$4.0M
Mathematical modeling of cellular signaling systemsR35GM127145 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Timothy C Elston · 2018 to 2026
$3.9M
UNC Predoc Training Progr in Bioinformatics/Comp BiologyT32GM067553 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C · 2005 to 2019
$2.5M
Howard Hughes Medical InstituteNIBIB NIH HHS U01 EB018816NICHD NIH HHS U54 HD079124NIGMS NIH HHS R35 GM122596NIGMS NIH HHS R35 GM127145NIGMS NIH HHS T32 GM008570NIGMS NIH HHS T32 GM067553NINDS NIH HHS P30 NS045892
6 · The paper itself

Abstract

Podosomes are actin-enriched adhesion structures important for multiple cellular processes, including migration, bone remodeling, and phagocytosis. Here, we characterize the structure and organization of phagocytic podosomes using interferometric photoactivated localization microscopy, a super-resolution microscopy technique capable of 15-20 nm resolution, together with structured illumination microscopy and localization-based super-resolution microscopy. Phagocytic podosomes are observed during frustrated phagocytosis, a model in which cells attempt to engulf micropatterned IgG antibodies. For circular patterns, this results in regular arrays of podosomes with well-defined geometry. Using persistent homology, we develop a pipeline for semi-automatic identification and measurement of podosome features. These studies reveal an hourglass shape of the podosome actin core, a protruding knob at the bottom of the core, and two actin networks extending from the core. Additionally, the distributions of paxillin, talin, myosin II, α-actinin, cortactin, and microtubules relative to actin are characterized.

Indexed as

PodosomesActinsMicroscopyMyosin Type IITalinActinsMyosin Type IITalin

Identifiers

PMID35896550
PMCPMC9329332
OpenAlexW4288068574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.