Evidence map›Paper›PMID 35895240›Full record

ArticleArchives of microbiology2022

Draft-genome analysis provides insights into the virulence properties and genome plasticity of Vibrio fluvialis organisms isolated from shrimp farms and Turag river in Bangladesh.

Maqsud Hossain, Abdul Mueed Ibne Momen, Aura Rahman, Juthi Biswas, Mahmuda Yasmin, Jamalun Nessa, Chowdhury Rafiqul Ahsan

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Article in Archives of microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Maqsud Hossain *NSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.ORCID http://orcid.org/0000-0001-9794-411X
Abdul Mueed Ibne Momen *NSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.ORCID https://orcid.org/0000-0002-4323-3109
Aura RahmanNSU Genome Research Institute (NGRI), North South University, Dhaka, Bangladesh.ORCID https://orcid.org/0000-0003-3244-5568
Juthi BiswasDepartment of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Mahmuda YasminDepartment of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Jamalun NessaDepartment of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Chowdhury Rafiqul AhsanDepartment of Microbiology, University of Dhaka, Dhaka, Bangladesh. crahsan@du.ac.bd.ORCID http://orcid.org/0000-0001-5024-6293
University of Dhaka · BDNorth South University · BD

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vibrio fluvialis is an opportunistic waterborne and seafood-borne enteric pathogen capable of causing severe diarrhea leading to death. This pathogen is endemic to Bangladesh, a country which is a major producer of cultured shrimp and wild-caught prawns. In this study, we carried out whole-genome sequencing of three V. fluvialis organisms isolated from shrimp farm and river sediment showing strong pathogenic characteristics in vivo and in vitro and compared their genomes against other V. fluvialis and related pathogenic species to glean insights into their potential as pathogens. Numerous virulence-associated genes including hemolysins, cytolysins, three separate Type IV pili, Types II and VI secretion systems, biofilm, and the V. cholerae pathogenesis regulating gene, toxR, were identified. Moreover, we found strain S-10 to have the propensity to acquire antibiotic resistance genes through horizontal gene transfer. These findings indicate that shrimp farms and rivers could be potential sources of V. fluvialis organisms which are an infection threat of public health concern.

Indexed as

VibrioVibrio choleraeAquacultureBangladeshRiversSeafoodVirulenceBangladeshGenomicsMobile genetic elementsPathogenicityVibrio fluvialisVirulence factors

Identifiers

PMID35895240
OpenAlexW4288051003

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.