Evidence map›Paper›PMID 35893699›Full record

ArticleViruses2022

Evolutionary Dynamics of Foot and Mouth Disease Virus Serotype A and Its Endemic Sub-Lineage A/ASIA/Iran-05/SIS-13 in Pakistan.

Syeda Sumera Naqvi, Nazish Bostan, Katsuhiko Fukai, Qurban Ali, Kazuki Morioka, Tatsuya Nishi, Muhammad Abubakar, Zaheer Ahmed, Sadia Sattar, Sundus Javed and 2 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Syeda Sumera NaqviMolecular Virology Laboratory, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.
Nazish BostanMolecular Virology Laboratory, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.
Katsuhiko FukaiExotic Disease Research Station, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1 Josui-honcho, Kodaira 187-0022, Japan.
Qurban AliNational Veterinary Laboratory, Ministry of National Food Security & Research, Islamabad 45710, Pakistan.
Kazuki MoriokaExotic Disease Research Station, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1 Josui-honcho, Kodaira 187-0022, Japan.
Tatsuya NishiExotic Disease Research Station, National Institute of Animal Health, National Agriculture and Food Research Organization, 6-20-1 Josui-honcho, Kodaira 187-0022, Japan.
Muhammad AbubakarNational Veterinary Laboratory, Ministry of National Food Security & Research, Islamabad 45710, Pakistan.
Zaheer AhmedReagent and Vaccine Services Section, Foreign Animal Disease Diagnostic Laboratory, Animal and Plant Health Inspection Service, National Veterinary Services Laboratories, United States Department of Agriculture, Plum Island Animal Disease Centre, Orient Point, Orient Point, Southold, NY 11957, USA.ORCID 0000-0001-9622-7418
Sadia SattarMolecular Virology Laboratory, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.ORCID 0000-0003-4521-016X
Sundus JavedMicrobiology and Immunology Laboratory, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.ORCID 0000-0001-8352-8078
Aamira TariqMicrobiology and Immunology Laboratory, Department of Biosciences, Comsats University Islamabad, Islamabad 45550, Pakistan.ORCID 0000-0003-3962-3320
Asma SadiqDepartment of Microbiology, University of Jhang, Jhang 35200, Pakistan.
COMSATS University Islamabad · PKNational Agriculture and Food Research Organization · JPAnimal and Plant Health Inspection Service · USWorld Health Organization - Pakistan · PK

Funding

World Health Organization 001
6 · The paper itself

Abstract

Foot and mouth disease (FMD) causes severe economic losses to the livestock industry of endemic countries, including Pakistan. Pakistan is part of the endemic pool 3 for foot and mouth disease viruses (FMDV), characterized by co-circulating O, A, and Asia 1 serotypes, as designated by the world reference laboratory for FMD (WRL-FMD). FMDV serotype A lineage ASIA/Iran-05 is widespread in buffalos and cattle populations and was first reported in Pakistan in 2006. This lineage has a high turnover, with as many as 10 sub-lineages reported from Pakistan over the years. In this study, we reconstructed the evolutionary, demographic, and spatial history of serotype A and one of its sub-lineages, A/ASIA/Iran-05/SIS-13, prevalent in Pakistan. We sequenced nearly complete genomes of three isolates belonging to sub-lineage A/ASIA/Iran-05/SIS-13. We estimated recombination patterns and natural selection acting on the serotype A genomes. Source and transmission routes in Pakistan were inferred, and the clustering pattern of isolates of the SIS-13 sub-lineage were mapped on a tree. We hereby report nearly complete genome sequences of isolates belonging to sub-lineage A/ASIA/Iran-05/SIS-13, along with purported recombinant genomes, and highlight that complete coding sequences can better elucidate the endemic history and evolutionary pressures acting on long-term co-circulating FMDV strains.

Indexed as

Foot-and-Mouth DiseaseFoot-and-Mouth Disease VirusAnimalsCattleIranPakistanPhylogenySerogroupadoptive evolutionfoot and mouth disease virusnext-generation sequencingPakistanphylogeographyrecombinationserotype A

Identifiers

PMID35893699
PMCPMC9331208
OpenAlexW4288180055

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.