Evidence map›Paper›PMID 35893688›Full record

ReviewViruses2022

Mechanistic Interplay between HIV-1 Reverse Transcriptase Enzyme Kinetics and Host SAMHD1 Protein: Viral Myeloid-Cell Tropism and Genomic Mutagenesis.

Nicole E Bowen, Adrian Oo, Baek Kim

Open access · goldAbstract readReview
In one paragraph

Review in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Nicole E BowenDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA 30329, USA.ORCID 0000-0003-4269-2167
Adrian OoDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA 30329, USA.ORCID 0000-0002-2469-5391
Baek KimDepartment of Pediatrics, School of Medicine, Emory University, Atlanta, GA 30329, USA.
Emory University · US

Funding

Lentivirus Replication Strategy and PathogenesisR01AI136581 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2018 to 2026
$3.9M
Elucidating SAMHD1 in DNA Double-Strand Break Repair (Supplement)R01CA254403 · NCI · EMORY UNIVERSITY · PI KIM, BAEK, YU, DAVID SUNG-WEN · 2020 to 2024
$2.9M
SAMHD1 mediated dNTP regulation and HIV in myeloid cellsR01AI162633 · NIAID · EMORY UNIVERSITY · PI Baek Kim · 2021 to 2026
$2.7M
Defining a common mechanism of SAMHD1 function in cancer, HIV, and AGSF31AI157884 · NIAID · EMORY UNIVERSITY · PI BOWEN, NICOLE EILEEN · 2021 to 2022
$86k
NCI NIH HHS R01 CA254403NIAID NIH HHS F31 AI157884NIAID NIH HHS R01 AI136581NIAID NIH HHS R01 AI162633NIH HHS AI136581NIH HHS AI157884NIH HHS AI162633NIH HHS CA254403
6 · The paper itself

Abstract

Human immunodeficiency virus type 1 (HIV-1) reverse transcriptase (RT) has been the primary interest among studies on antiviral discovery, viral replication kinetics, drug resistance, and viral evolution. Following infection and entry into target cells, the HIV-1 core disassembles, and the viral RT concomitantly converts the viral RNA into double-stranded proviral DNA, which is integrated into the host genome. The successful completion of the viral life cycle highly depends on the enzymatic DNA polymerase activity of RT. Furthermore, HIV-1 RT has long been known as an error-prone DNA polymerase due to its lack of proofreading exonuclease properties. Indeed, the low fidelity of HIV-1 RT has been considered as one of the key factors in the uniquely high rate of mutagenesis of HIV-1, which leads to efficient viral escape from immune and therapeutic antiviral selective pressures. Interestingly, a series of studies on the replication kinetics of HIV-1 in non-dividing myeloid cells and myeloid specific host restriction factor, SAM domain, and HD domain-containing protein, SAMHD1, suggest that the myeloid cell tropism and high rate of mutagenesis of HIV-1 are mechanistically connected. Here, we review not only HIV-1 RT as a key antiviral target, but also potential evolutionary and mechanistic crosstalk among the unique enzymatic features of HIV-1 RT, the replication kinetics of HIV-1, cell tropism, viral genetic mutation, and host SAMHD1 protein.

Indexed as

HIV-1HIV Reverse TranscriptaseSAM Domain and HD Domain-Containing Protein 1Viral TropismAntiviral AgentsDNA-Directed DNA PolymeraseGenomicsHumansMutagenesisMyeloid CellsVirus ReplicationAntiviral AgentsDNA-Directed DNA PolymeraseHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1SAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanantiretroviral therapycell tropismdrug resistancehuman immunodeficiency virus type 1mutationretrovirusreverse transcriptaseSAMHD1

Identifiers

PMID35893688
PMCPMC9331428
OpenAlexW4288181319

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.