Evidence map›Paper›PMID 35892512›Full record

ArticleDiagnostics (Basel, Switzerland)2022

A Diagnostic Gene Expression Signature for Bladder Cancer Can Stratify Cases into Prescribed Molecular Subtypes and Predict Outcome.

Runpu Chen, Ian Pagano, Yijun Sun, Kaoru Murakami, Steve Goodison, Ramanathan Vairavan, Malak Tahsin, Peter C Black, Charles J Rosser, Hideki Furuya

Abstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Runpu ChenDepartment of Microbiology and Immunology, The State University of New York at Buffalo, Buffalo, NY 14260, USA.
Ian PaganoCancer Prevention and Control Program, University of Hawaii Cancer Center, Honolulu, HI 96813, USA.ORCID 0000-0002-6248-0113
Yijun SunDepartment of Computer Science and Engineering, The State University of New York at Buffalo, Buffalo, NY 14260, USA.
Kaoru MurakamiCedars-Sinai Medical Center, Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA 90048, USA.
Steve GoodisonQuantitative Health Sciences, Mayo Clinic, Jacksonville, FL 32224, USA.
Ramanathan VairavanDiaCarta Inc., Pleasanton, CA 94588, USA.
Malak TahsinDiaCarta Inc., Pleasanton, CA 94588, USA.ORCID 0000-0001-6299-6673
Peter C BlackDepartment of Urologic Sciences, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Charles J RosserCedars-Sinai Medical Center, Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA 90048, USA.ORCID 0000-0002-6052-4223
Hideki FuruyaCedars-Sinai Medical Center, Samuel Oschin Comprehensive Cancer Institute, Los Angeles, CA 90048, USA.ORCID 0000-0002-9536-8662

Funding

VALIDATION OF A MULTIPLEXED ASSAY FOR BLADDER CANCER DIAGNOSISR01CA198887 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI ROSSER, CHARLES J · 2016 to 2025
$6.8M
Towards a non-invasive molecular test for bladder cancerR01CA116161 · NCI · UNIVERSITY OF FLORIDA · PI GOODISON, STEVE · 2007 to 2019
$2.9M
Advanced Computational Approaches to Delineating Dynamic Cancer Progression Processes by Using Massive Static Sample DataR01CA241123 · NCI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI GOODISON, STEVE, SUN, YIJUN · 2020 to 2024
$1.8M
A Multiplex Protein Biomarker-Based Immunoassay for the Early Detection of Bladder Cancer and its Implications in Tumor BiologyR01CA277810 · NCI · CEDARS-SINAI MEDICAL CENTER · PI Hideki Furuya, Charles J Rosser · 2023 to 2026
$1.6M
Humanized anti-CXCL1 antibody for bladder cancer therapeuticsR21CA263230 · NCI · CEDARS-SINAI MEDICAL CENTER · PI FURUYA, HIDEKI · 2021 to 2022
$423k
NCI NIH HHS R01 CA116161NCI NIH HHS R01 CA198887NCI NIH HHS R01CA198887NCI NIH HHS R01 CA241123NCI NIH HHS R01CA241123NCI NIH HHS R01 CA277810NCI NIH HHS R21 CA263230NCI NIH HHS R21CA263230
6 · The paper itself

Abstract

Bladder cancer is a biologically heterogeneous disease with variable clinical presentations, outcomes and responses to therapy. Thus, the clinical utility of single biomarkers for the detection and prediction of biological behavior of bladder cancer is limited. We have previously identified and validated a bladder cancer diagnostic signature composed of 10 biomarkers, which has been incorporated into a multiplex immunoassay bladder cancer test, Oncuria™. In this study, we evaluate whether these 10 biomarkers can assist in the prediction of bladder cancer clinical outcomes. Tumor gene expression and patient survival data from bladder cancer cases from The Cancer Genome Atlas (TCGA) were analyzed. Alignment between the mRNA expression of 10 biomarkers and the TCGA 2017 subtype classification was assessed. Kaplan-Meier analysis of multiple gene expression datasets indicated that high expression of the combined 10 biomarkers correlated with a significant reduction in overall survival. The analysis of three independent, publicly available gene expression datasets confirmed that multiplex prognostic models outperformed single biomarkers. In total, 8 of the 10 biomarkers from the Oncuria™ test were significantly associated with either luminal or basal molecular subtypes, and thus, the test has the potential to assist in the prediction of clinical outcome.

Indexed as

biomarkerbladder cancermolecular diagnosticmultiplexoutcomes

Identifiers

PMID35892512
PMCPMC9332739

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.