Evidence map›Paper›PMID 35891452›Full record

ArticleViruses2022

A Deeper Insight into Evolutionary Patterns and Phylogenetic History of ORF Virus through the Whole Genome Sequencing of the First Italian Strains.

Elisabetta Coradduzza, Daria Sanna, Fabio Scarpa, Ilenia Azzena, Mariangela S Fiori, Rosario Scivoli, Angela M Rocchigiani, Roberto Bechere, Maria A Dettori, Davide Pintus and 4 more

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Elisabetta CoradduzzaIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.ORCID 0000-0001-6942-3296
Daria SannaDipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy.ORCID 0000-0002-3058-4663
Fabio ScarpaDipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy.ORCID 0000-0002-3501-714X
Ilenia AzzenaDipartimento di Scienze Biomediche, Università di Sassari, 07100 Sassari, Italy.
Mariangela S FioriIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.ORCID 0000-0002-1292-5022
Rosario ScivoliIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.ORCID 0000-0002-5219-6928
Angela M RocchigianiIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.
Roberto BechereIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.
Maria A DettoriIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.
Davide PintusIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.
Eloisa EvangelistaAmes Polydiagnostic Group Center SRL, Casalnuovo di Napoli, 80013 Naples, Italy.
Marco CasuDipartimento di Medicina Veterinaria, Università di Sassari, 07100 Sassari, Italy.ORCID 0000-0002-5042-4851
Ciriaco LigiosIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.
Giantonella PuggioniIstituto Zooprofilattico Sperimentale della Sardegna, 07100 Sassari, Italy.ORCID 0000-0001-9013-8203

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Orf virus (ORFV) is distributed worldwide and is the causative agent of contagious ecthyma that mainly occurs in sheep and goats. This disease was reported for the first time at the end of 18th century in Europe but very little is currently known about the temporal and geographic origins of this virus. In the present study, the use of new Italian whole genomes allowed for better inference on the evolutionary history of ORFV. In accordance with previous studies, two genome types (S and G) were described for infection of sheep and goats, respectively. These two well-differentiated groups of genomes originated for evolutive convergence in the late 1800s in two different areas of the world (Europe for S type and Asia for G type), but it was only in the early 1900s that the effective size of ORFV increased among hosts and the virus spread across the whole European continent. The Italian strains which were sequenced in the present study were isolated on the Mediterranean island of Sardinian and showed to be exclusive to this geographic area. One of them is likely representative of the early European forms of ORFV which infected sheep and became extinct about one century ago. Such an ancient Sardinian strain may have reached the island simple by chance, where it quickly adapted to the new habitat.

Indexed as

Ecthyma, ContagiousOrf virusAnimalsGoatsPhylogenySheepWhole Genome Sequencinggenome typesmolecular datingORFVSardinia

Identifiers

PMID35891452
PMCPMC9318404

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.