Evidence map›Paper›PMID 35891373›Full record

ArticleViruses2022

Infectious Bronchitis Coronavirus: Genome Evolution in Vaccinated and Non-Vaccinated SPF Chickens.

Alexandre Flageul, Chantal Allée, Céline Courtillon, Véronique Béven, Hélène Quenault, Yannick Blanchard, Michel Amelot, David Courtois, Sjaak De Wit, Nicolas Eterradossi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Alexandre FlageulVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Chantal AlléeVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Céline CourtillonVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.ORCID 0000-0002-3006-764X
Véronique BévenGénétique Virale et Biosécurité, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Hélène QuenaultGénétique Virale et Biosécurité, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Yannick BlanchardGénétique Virale et Biosécurité, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Michel AmelotService d'Elevage et d'Expérimentation Avicole et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
David CourtoisService d'Elevage et d'Expérimentation Avicole et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Sjaak De WitRoyal GD, Department of Farm Animal Health, Faculty of Veterinary Medicine, Utrecht University, 7418 EZ Deventer, The Netherlands.
Nicolas EterradossiVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Béatrice GraslandVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.
Paul A BrownVirology, Immunology, Parasitology, Aviaire et Cunicole, French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Laboratoire de Ploufragan-Plouzané-Niort, Université de Rennes 1, 22440 Ploufragan, France.ORCID 0000-0002-6697-7688
Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail · FRUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious Bronchitis virus (IBV) continues to cause significant economic losses for the chicken industry despite the use of many live IBV vaccines around the world. Several authors have suggested that vaccine-induced partial protection may contribute to the emergence of new IBV strains. In order to study this hypothesis, three passages of a challenge IBV were made in SPF chickens sham inoculated or vaccinated at day of age using a live vaccine heterologous to the challenge virus. All birds that were challenged with vaccine heterologous virus were positive for viral RNA. NGS analysis of viral RNA in the unvaccinated group showed a rapid selection of seven genetic variants, finally modifying the consensus genome of the viral population. Among them, five were non-synonymous, modifying one position in NSP 8, one in NSP 13, and three in the Spike protein. In the vaccinated group, one genetic variant was selected over the three passages. This synonymous modification was absent from the unvaccinated group. Under these conditions, the genome population of an IBV challenge virus evolved rapidly in both heterologous vaccinated and non-vaccinated birds, while the genetic changes that were selected and the locations of these were very different between the two groups.

Indexed as

BronchitisCommunicable DiseasesCoronavirus InfectionsInfectious bronchitis virusPoultry DiseasesViral VaccinesAnimalsChickensEvolution, MolecularRNA, ViralVaccines, AttenuatedRNA, ViralVaccines, AttenuatedViral Vaccinescoronavirusevolutioninfectious bronchitisvaccinationvariants

Identifiers

PMID35891373
PMCPMC9319055
OpenAlexW4283581427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.