Evidence map›Paper›PMID 35889093›Full record

ArticleMicroorganisms2022

Comparative Genomic Analysis of the Marine Cyanobacterium Acaryochloris marina MBIC10699 Reveals the Impact of Phycobiliprotein Reacquisition and the Diversity of Acaryochloris Plasmids

Haruki Yamamoto, Kazuma Uesaka, Yuki Tsuzuki, Hisanori Yamakawa, Shigeru Itoh, Yuichi Fujita

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Haruki YamamotoGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Kazuma UesakaCenter for Gene Research, Nagoya University, Nagoya 464-8601, Japan.
Yuki TsuzukiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Hisanori YamakawaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Shigeru ItohGraduate School of Sciences, Nagoya University, Nagoya 464-8601, Japan.ORCID 0000-0002-3065-5812
Yuichi FujitaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Nagoya University · JP

Funding

Japan Science and Technology Agency JPMJPF2102Japan Society for the Promotion of Science 16H04754Japan Society for the Promotion of Science 17K07440Japan Society for the Promotion of Science 18K19173Japan Society for the Promotion of Science 19K21143Japan Society for the Promotion of Science 20H03196Japan Society for the Promotion of Science 20K06542Japan Society for the Promotion of Science 20K06684
6 · The paper itself

Abstract

Acaryochloris is a marine cyanobacterium that synthesizes chlorophyll d, a unique chlorophyll that absorbs far-red lights. Acaryochloris is also characterized by the loss of phycobiliprotein (PBP), a photosynthetic antenna specific to cyanobacteria; however, only the type-strain A. marina MBIC11017 retains PBP, suggesting that PBP-related genes were reacquired through horizontal gene transfer (HGT). Acaryochloris is thought to have adapted to various environments through its huge genome size and the genes acquired through HGT; however, genomic information on Acaryochloris is limited. In this study, we report the complete genome sequence of A. marina MBIC10699, which was isolated from the same area of ocean as A. marina MBIC11017 as a PBP-less strain. The genome of A.marina MBIC10699 consists of a 6.4 Mb chromosome and four large plasmids totaling about 7.6 Mb, and the phylogenic analysis shows that A.marina MBIC10699 is the most closely related to A. marina MBIC11017 among the Acaryochloris species reported so far. Compared with A. marina MBIC11017, the chromosomal genes are highly conserved between them, while the genes encoded in the plasmids are significantly diverse. Comparing these genomes provides clues as to how the genes for PBPs were reacquired and what changes occurred in the genes for photosystems during evolution.

Indexed as

Acaryochloriscomparative genome analysiscyanobacteria

Identifiers

PMID35889093
PMCPMC9324425
OpenAlexW4284891351

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.