Evidence map›Paper›PMID 35887614›Full record

ArticleJournal of personalized medicine2022

A Novel Surrogate Nomogram Capable of Predicting OncotypeDX Recurrence Score©.

Matthew G Davey, Amirhossein Jalali, Éanna J Ryan, Ray P McLaughlin, Karl J Sweeney, Michael K Barry, Carmel M Malone, Maccon M Keane, Aoife J Lowery, Nicola Miller and 1 more

Abstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Matthew G DaveyThe Lambe Institute for Translational Research, National University of Ireland, H91 TK33 Galway, Ireland.ORCID 0000-0002-9892-9920
Amirhossein JalaliDepartment of Mathematics and Statistics, University of Limerick, V94 T9PX Limerick, Ireland.ORCID 0000-0001-7227-8261
Éanna J RyanDepartment of Surgery, Galway University Hospitals, H91 YR71 Galway, Ireland.ORCID 0000-0003-2609-0836
Ray P McLaughlinDepartment of Surgery, Galway University Hospitals, H91 YR71 Galway, Ireland.
Karl J SweeneyDepartment of Surgery, Galway University Hospitals, H91 YR71 Galway, Ireland.
Michael K BarryDepartment of Surgery, Galway University Hospitals, H91 YR71 Galway, Ireland.
Carmel M MaloneDepartment of Surgery, Galway University Hospitals, H91 YR71 Galway, Ireland.
Maccon M KeaneDepartment of Medical Oncology, Galway University Hospitals, H91 YR71 Galway, Ireland.
Aoife J LoweryThe Lambe Institute for Translational Research, National University of Ireland, H91 TK33 Galway, Ireland.
Nicola MillerThe Lambe Institute for Translational Research, National University of Ireland, H91 TK33 Galway, Ireland.
Michael J KerinThe Lambe Institute for Translational Research, National University of Ireland, H91 TK33 Galway, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: OncotypeDX Recurrence Score© (RS) is a commercially available 21-gene expression assay which estimates prognosis and guides chemoendocrine prescription in early-stage estrogen-receptor positive, human epidermal growth factor receptor-2-negative (ER+/HER2−) breast cancer. Limitations of RS testing include the cost and turnaround time of several weeks. Aim: Our aim is to develop a user-friendly surrogate nomogram capable of predicting RS. Methods: Multivariable linear regression analyses were performed to determine predictors of RS and RS > 25. Receiver operating characteristic analysis produced an area under the curve (AUC) for each model, with training and test sets were composed of 70.3% (n = 315) and 29.7% (n = 133). A dynamic, user-friendly nomogram was built to predict RS using R (version 4.0.3). Results: 448 consecutive patients who underwent RS testing were included (median age: 58 years). Using multivariable regression analyses, postmenopausal status (β-Coefficient: 0.25, 95% confidence intervals (CIs): 0.03−0.48, p = 0.028), grade 3 disease (β-Coefficient: 0.28, 95% CIs: 0.03−0.52, p = 0.026), and estrogen receptor (ER) score (β-Coefficient: −0.14, 95% CIs: −0.22−−0.06, p = 0.001) all independently predicted RS, with AUC of 0.719. Using multivariable regression analyses, grade 3 disease (odds ratio (OR): 5.67, 95% CIs: 1.32−40.00, p = 0.037), decreased ER score (OR: 1.33, 95% CIs: 1.02−1.66, p = 0.050) and decreased progesterone receptor score (OR: 1.16, 95% CIs: 1.06−1.25, p = 0.002) all independently predicted RS > 25, with AUC of 0.740 for the static and dynamic online nomogram model. Conclusions: This study designed and validated an online user-friendly nomogram from routinely available clinicopathological parameters capable of predicting outcomes of the 21-gene RS expression assay.

Indexed as

breast cancergenomicspersonalized medicinesurgical oncology

Identifiers

PMID35887614
PMCPMC9318604

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.