Evidence map›Paper›PMID 35885909›Full record

ArticleGenes2022

PromoterLCNN: A Light CNN-Based Promoter Prediction and Classification Model.

Daryl Hernández, Nicolás Jara, Mauricio Araya, Roberto E Durán, Carlos Buil-Aranda

Abstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daryl HernándezDepartment of Electronics Engineering, Universidad Técnica Federico Santa María, Valparaiso 2390123, Chile.
Nicolás JaraDepartment of Electronics Engineering, Universidad Técnica Federico Santa María, Valparaiso 2390123, Chile.ORCID 0000-0003-2495-8929
Mauricio ArayaDepartment of Electronics Engineering, Universidad Técnica Federico Santa María, Valparaiso 2390123, Chile.ORCID 0000-0003-3472-4130
Roberto E DuránLaboratorio de Microbiología Molecular y Biotecnología Ambiental, Departamento de Química & Centro de Biotecnología Daniel Alkalay Lowitt, Universidad Técnica Federico Santa María, Valparaiso 2390123, Chile.ORCID 0000-0003-0077-9483
Carlos Buil-ArandaDepartment of Informatics Engineering, Universidad Técnica Federico Santa María, Valparaiso 2390123, Chile.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Promoter identification is a fundamental step in understanding bacterial gene regulation mechanisms. However, accurate and fast classification of bacterial promoters continues to be challenging. New methods based on deep convolutional networks have been applied to identify and classify bacterial promoters recognized by sigma (σ) factors and RNA polymerase subunits which increase affinity to specific DNA sequences to modulate transcription and respond to nutritional or environmental changes. This work presents a new multiclass promoter prediction model by using convolutional neural networks (CNNs), denoted as PromoterLCNN, which classifies

Indexed as

DNA-Directed RNA PolymerasesSigma FactorEscherichia coliGene Expression Regulation, BacterialPromoter Regions, GeneticDNA-Directed RNA PolymerasesSigma Factorbacterial promotersbioinformaticsconvolutional neural networksdeep learningPromoterLCNN

Identifiers

PMID35885909
PMCPMC9325283

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.