ArticleAnimals : an open access journal from MDPI2022
In Silico Screening and Development of Microsatellite Markers for Genetic Analysis in
Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 13 citations in OpenAlex.
- Comparative Population Genetics ofAnimals : an open access journal from MDPI · 2026Article
- Intervention of Fish (Foods (Basel, Switzerland) · 2026Article
- Development of novel InDel markers by whole-genome sequence comparison and genetic diversity assessment of Thailand rice blast fungus populations.Stress biology · 2025Article
- Genome-Wide In Silico Analysis of Microsatellite Loci in Rabbits.Animals : an open access journal from MDPI · 2024Article
- Genome-wide development of intra- and inter-specific transferable SSR markers and construction of a dynamic web resource for yam molecular breeding: Y2MD.The plant genome · 2024Article
- Genome-wide in silico characterization, validation, and cross-species transferability of microsatellite markers in Mallard and Muscovy ducks.Journal, genetic engineering & biotechnology · 2023Article
- Trends of Eurasian Perch (Animals : an open access journal from MDPI · 2023Article
- Article
- Review
- Quality of DNA extracted from freshwater fish scales and mucus and its application in genetic diversity studies ofBiology methods & protocols · 2023Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
Perca fluviatilis is an economically important species of freshwater fish. To understand the genetic structure of P. fluviatilis in China, 268 samples were collected from Wulungu Lake (WL), Jili Lake (JL), the Wulungu River (WR), and the Kalaeerqisi River (KR). These samples were then analyzed using microsatellite markers. A total of 98,425 microsatellite markers were developed based on the genomic data, and 29 polymorphic microsatellite markers were selected to analyze genetic diversity in this study. The number of alleles (Na) and observed heterozygosity (Ho) per population ranged from 4.621 (KR) to 11.172 (WL) and from 0.510 (KR) to 0.716 (JL), respectively. The results of the polymorphic information content (PIC) showed that the WL, JL, and WR populations were highly polymorphic (PIC≥ 0.5) and that the KR population was moderately polymorphic (0.25 ≤ PIC < 0.5). The genetic differentiation coefficient (Fst) among the four P. fluviatilis populations was 0.074, indicating moderate genetic differentiation among the populations in Xinjiang. The reason for the significant difference between the rivers and lakes could be the presence of a dam blocking the flow of P. fluviatilis. The development of microsatellite markers provides support for population genetics in the future. The evaluation of the genetic structure of P. fluviatilis in Xinjiang provides a reference for the reproduction and conservation of P. fluviatilis.
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