Evidence map›Paper›PMID 35883238›Full record

ArticleJournal of biomedical optics2022

Noise-robust phase-space deconvolution for light-field microscopy.

Tianyi Zhu, Yuduo Guo, Yi Zhang, Zhi Lu, Xing Lin, Lu Fang, Jiamin Wu, Qionghai Dai

Open access · goldAbstract read
In one paragraph

Article in Journal of biomedical optics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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  5. Myeloid-Mas Signaling Modulates Pathogenic Crosstalk among MYCAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Tianyi ZhuTsinghua University, Tsinghua-Berkeley Shenzhen Institute, Beijing, China, China.
Yuduo GuoTsinghua University, Tsinghua-Berkeley Shenzhen Institute, Beijing, China, China.
Yi ZhangTsinghua University, Department of Automation, Beijing, China, China.
Zhi LuTsinghua University, Department of Automation, Beijing, China, China.
Xing LinTsinghua University, Department of Automation, Beijing, China, China.
Lu FangTsinghua University, Department of Electronic Engineering, Beijing, China, China.
Jiamin WuTsinghua University, Department of Automation, Beijing, China, China.
Qionghai DaiTsinghua University, Department of Automation, Beijing, China, China.
Tsinghua University · CNTsinghua–Berkeley Shenzhen Institute · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

significanceLight-field microscopy has achieved success in various applications of life sciences that require high-speed volumetric imaging. However, existing light-field reconstruction algorithms degrade severely in low-light conditions, and the deconvolution process is time-consuming.

aimThis study aims to develop a noise robustness phase-space deconvolution method with low computational costs. APPROACH: We reformulate the light-field phase-space deconvolution model into the Fourier domain with random-subset ordering and total-variation (TV) regularization. Additionally, we build a time-division-based multicolor light-field microscopy and conduct the three-dimensional (3D) imaging of the heart beating in zebrafish larva at over 95 Hz with a low light dose.

resultsWe demonstrate that this approach reduces computational resources, brings a tenfold speedup, and achieves a tenfold improvement for the noise robustness in terms of SSIM over the state-of-the-art approach.

conclusionsWe proposed a phase-space deconvolution algorithm for 3D reconstructions in fluorescence imaging. Compared with the state-of-the-art method, we show significant improvement in both computational effectiveness and noise robustness; we further demonstrated practical application on zebrafish larva with low exposure and low light dose.

Indexed as

Image Processing, Computer-AssistedMicroscopyAlgorithmsAnimalsZebrafishfluorescence imaginglight-field reconstructionphase-spacethree-dimensional imaging

Identifiers

PMID35883238
PMCPMC9319196
OpenAlexW4288010465

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.