Evidence map›Paper›PMID 35878980›Full record

ArticleMethods in enzymology2022

Preparation of carotenoid cleavage dioxygenases for X-ray crystallography.

Anahita Daruwalla, Xuewu Sui, Philip D Kiser

Open access · greenAbstract read
In one paragraph

Article in Methods in enzymology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
3.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Anahita DaruwallaDepartment of Physiology & Biophysics, University of California, Irvine School of Medicine, Irvine, CA, United States.
Xuewu SuiDepartment of Molecular Metabolism, Harvard T.H. Chan School of Public Health, Boston, MA, United States; Department of Cell Biology, Harvard Medical School, Boston, MA, United States.
Philip D KiserDepartment of Physiology & Biophysics, University of California, Irvine School of Medicine, Irvine, CA, United States; Department of Ophthalmology, Center for Translational Vision Research, University of California, Irvine School of Medicine, Irvine, CA, United States; Research Service, VA Long Beach Healthcare System, Long Beach, CA, United States. Electronic address: pkiser@uci.edu.
University of California, Irvine · USHarvard University · US

Funding

Use of systems pharmacology to prevent rod and cone photoreceptor degenerationR24EY027283 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI PALCZEWSKI, KRZYSZTOF · 2017 to 2021
$7.9M
Retinoid cycles and retinal disease treatmentI01BX004939 · VA · VETERANS HEALTH ADMINISTRATION · PI KISER, PHILIP DAVID · 2020 to 2025
–
BLRD VA I01 BX004939NEI NIH HHS R24 EY027283
6 · The paper itself

Abstract

Carotenoid cleavage dioxygenases (CCDs) constitute a superfamily of enzymes that are found in all domains of life where they play key roles in the metabolism of carotenoids and apocarotenoids as well as certain phenylpropanoids such as resveratrol. Interest in these enzymes stems not only from their biological importance but also from their remarkable catalytic properties including their regioselectivity, their ability to accommodate diverse substrates, and the additional activities (e.g., isomerase) that some of these enzyme possess. X-ray crystallography is a key experimental approach that has allowed detailed investigation into the structural basis behind the interesting biochemical features of these enzymes. Here, we describe approaches used by our lab that have proven successful in generating single crystals of these enzymes in resting or ligand-bound states for high-resolution X-ray diffraction analysis.

Indexed as

DioxygenasesCarotenoidsCatalysisCrystallography, X-RayIsomerasesCarotenoidsDioxygenasesIsomerasesApocarotenoidCarotenoidCleavage dioxygenaseCobaltCrystallizationEnzymeMetalloenzymeNon-heme ironX-ray crystallography

Identifiers

PMID35878980
PMCPMC10809780
OpenAlexW4286600842

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.