Evidence map›Paper›PMID 35876801›Full record

ArticleGenetics2022

A distinct P-body-like granule is induced in response to the disruption of microtubule integrity in Saccharomyces cerevisiae.

Zachary Hurst, Wenfang Liu, Qian Shi, Paul K Herman

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zachary HurstDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0001-6196-4610
Wenfang LiuDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0001-7942-1921
Qian ShiDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-4794-5795
Paul K HermanDepartment of Molecular Genetics, The Ohio State University, Columbus, OH 43210, USA.ORCID 0000-0002-2051-8355
The Ohio State University · US

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
An analysis of the regulation and functions of a novel family of membraneless organelles in eukaryotic cellsR01GM128440 · NIGMS · OHIO STATE UNIVERSITY · PI Paul K Herman · 2018 to 2026
$2.7M
NCI NIH HHS P30 CA016058NIGMS NIH HHS R01 GM128440
6 · The paper itself

Abstract

The Processing-body is a conserved membraneless organelle that has been implicated in the storage and/or decay of mRNAs. Although Processing-bodies have been shown to be induced by a variety of conditions, the mechanisms controlling their assembly and their precise physiological roles in eukaryotic cells are still being worked out. In this study, we find that a distinct subtype of Processing-body is induced in response to conditions that disrupt microtubule integrity in the budding yeast, Saccharomyces cerevisiae. For example, treatment with the microtubule-destabilizing agent, benomyl, led to the induction of these novel ribonucleoprotein granules. A link to microtubules had been noted previously and the observations here extend our understanding by demonstrating that the induced foci differ from traditional P-bodies in a number of significant ways. These include differences in overall granule morphology, protein composition, and the manner in which their induction is regulated. Of particular note, several key Processing-body constituents are absent from these benomyl-induced granules, including the Pat1 protein that is normally required for efficient Processing-body assembly. However, these novel ribonucleoprotein structures still contain many known Processing-body proteins and exhibit similar hallmarks of a liquid-like compartment. In all, the data suggest that the disruption of microtubule integrity leads to the formation of a novel type of Processing-body granule that may have distinct biological activities in the cell. Future work will aim to identify the biological activities of these benomyl-induced granules and to determine, in turn, whether these Processing-body-like granules have any role in the regulation of microtubule dynamics.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsBenomylCytoplasmic GranulesMicrotubulesProcessing BodiesRNA-Binding ProteinsBenomylPAT1 protein, S cerevisiaeRNA-Binding ProteinsSaccharomyces cerevisiae Proteinscasein kinase Iliquid-liquid phase separationmicrotubulesprefoldinProcessing-bodiesribonucleoprotein (RNP) granules

Identifiers

PMID35876801
PMCPMC9434292
OpenAlexW4287447126

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.