Evidence map›Paper›PMID 35876628›Full record

ArticlePigment cell & melanoma research2022

Landscape of mutations in early stage primary cutaneous melanoma: An InterMEL study.

Li Luo, Ronglai Shen, Arshi Arora, Irene Orlow, Klaus J Busam, Cecilia Lezcano, Tim K Lee, Eva Hernando, Ivan Gorlov, Christopher Amos and 35 more

Open access · hybridAbstract read
In one paragraph

Article in Pigment cell & melanoma research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Functional characterization of the 9q34.13 locus identifiesbioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Tumor miRNA Signatures Associate with Outcomes of Patients with Stage II/III Melanoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Innate Immune Cells in Melanoma: Implications for Immunotherapy.International journal of molecular sciences · 2024
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. p53 Family in Resistance to Targeted Therapy of Melanoma.International journal of molecular sciences · 2022
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors at 19 institutions in 4 countries.

Li LuoDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.
Ronglai ShenDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Arshi AroraDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Irene OrlowDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID 0000-0001-6234-6961
Klaus J BusamDepartment of Pathology and Laboratory Science, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Cecilia LezcanoDepartment of Pathology and Laboratory Science, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Tim K LeeBritish Columbia Cancer Research Center, Vancouver, British Columbia, Canada.
Eva HernandoLangone Cancer Center, New York University, New York, New York, USA.
Ivan GorlovEpidemiology and Population Science, Baylor Medical Center, Houston, Texas, USA.
Christopher AmosEpidemiology and Population Science, Baylor Medical Center, Houston, Texas, USA.
Marc S ErnstoffImmunoOncology Branch, National Cancer Institute, Rockville, Maryland, USA.
Venkatraman E SeshanDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Anne E CustThe Daffodil Centre, The University of Sydney, a joint venture with Cancer Council NSW, Sydney, New South Wales, Australia.
James WilmottMelanoma Institute of Australia, The University of Sydney, Sydney, New South Wales, Australia.
Richard A ScolyerMelanoma Institute of Australia, The University of Sydney, Sydney, New South Wales, Australia.ORCID 0000-0002-8991-0013
Graham MannJohn Curtin School of Medical Research, Australian National University, Acton, Australian Capital Territory, Australia.
Eduardo NagoreInstituto de Oncologia, Valencia, Spain.
Pauline FunchainCleveland Clinic Foundation, Cleveland, Ohio, USA.
Jennifer KoCleveland Clinic Foundation, Cleveland, Ohio, USA.
Peter NgoCleveland Clinic Foundation, Cleveland, Ohio, USA.
Sharon N EdmistonDepartment of Dermatology and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Kathleen ConwayDepartment of Dermatology and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Paul B GoogeDepartment of Dermatology and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
David OllilaDepartment of Dermatology and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Jeffrey E LeeThe University of Texas MDAnderson Cancer Center, Houston, Texas, USA.
Shenying FangThe University of Texas MDAnderson Cancer Center, Houston, Texas, USA.
Judy R ReesDartmouth Cancer Center, Lebanon, New Hampshire, USA.
Cheryl L ThompsonCase Western Reserve University, Cleveland, Ohio, USA.
Meg GerstenblithCase Western Reserve University, Cleveland, Ohio, USA.
Marcus BosenbergDepartment of Pathology, Yale University, New Haven, Connecticut, USA.
Bonnie Gould RothbergDepartment of Pathology, Yale University, New Haven, Connecticut, USA.
Iman OsmanLangone Cancer Center, New York University, New York, New York, USA.
Yvonne SaengerColumbia University Medical School, New York, New York, USA.
Adam Z ReynoldsDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.
Matthew SchwartzDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.ORCID 0000-0001-9563-5727
Tawny BoyceDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.
Sheri HolmenHuntsman Cancer Center, University of Utah, Salt Lake City, Utah, USA.ORCID 0000-0002-6411-6032
Elise BrunsgaardHuntsman Cancer Center, University of Utah, Salt Lake City, Utah, USA.
Paul BognerDepartments of Pathology and Dermatology, Roswell Park Comprehensive Cancer Center, Buffalo, New York, USA.
Pei Fen KuanStony Brook University, Stony Brook, New York, USA.
Charles WigginsDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.
Nancy E ThomasDepartment of Dermatology and Lineberger Comprehensive Cancer Center, University of North Carolina, Chapel Hill, North Carolina, USA.
Colin B BeggDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Marianne BerwickDepartment of Internal Medicine and the UNM Comprehensive Cancer Center, Albuquerque, New Mexico, USA.ORCID 0000-0001-5062-2180
InterMEL
Memorial Sloan Kettering Cancer Center · USNew Mexico Cancer Center · USUniversity of North Carolina at Chapel Hill · USCleveland Clinic · USThe University of Sydney · AUCase Western Reserve University · USNYU Langone Health · USTexas Medical Center · USThe University of Texas MD Anderson Cancer Center · USUniversity of Utah · USYale University · USAlbert Einstein College of Medicine · USAustralian National University · AUBC Cancer Agency · CADartmouth Psychiatric Research Center · USFundación Instituto Valenciano de Oncología · ESNational Cancer Institute · USRoswell Park Comprehensive Cancer Center · USStony Brook University · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI David Darr · 1985 to 2026
$201.5M
Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Stephanie Engel · 2001 to 2026
$36.3M
Project 4P50CA225450 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KIRCHHOFF, TOMAS · 2019 to 2025
$12.5M
The University of Texas MD Anderson Cancer Center SPORE in MelanomaP50CA221703 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DAVIES, MICHAEL · 2019 to 2023
$10.3M
Sex Differences in Methylome Alterations and Mutational Burden in Early Stage MelanomaP01CA206980 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI BERWICK, MARIANNE, THOMAS, NANCY E. · 2017 to 2022
$10.1M
NRSA in GeneticsT32GM135128 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Daniel J McKay, JEFF J. SEKELSKY · 2020 to 2026
$5.1M
Identification of Lethal Melanomas at the Time of DiagnosisR01CA233524 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ANTON-CULVER, HODA A, BEGG, COLIN B · 2020 to 2024
$4.5M
Harnessing Rare Variants for Tumor ClassificationR01CA251339 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI BEGG, COLIN B, SHEN, RONGLAI · 2021 to 2023
$1.2M
High-Throughput DNA-Methylation Profiling from Fixed Melanocytic TissuesR33CA160138 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DORSEY, KATHLEEN CONWAY, THOMAS, NANCY E. · 2011 to 2013
$979k
NCATS NIH HHS UL1 TR001863NCI NIH HHS K08 CA151645NCI NIH HHS P01 CA206980NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016086NCI NIH HHS P30 CA118100NCI NIH HHS P50 CA221703NCI NIH HHS P50 CA225450NCI NIH HHS R01 CA233524NCI NIH HHS R01 CA251339NCI NIH HHS R21 CA245577NCI NIH HHS R33 CA160138NIEHS NIH HHS P30 ES010126NIGMS NIH HHS T32 GM135128
6 · The paper itself

Abstract

It is unclear why some melanomas aggressively metastasize while others remain indolent. Available studies employing multi-omic profiling of melanomas are based on large primary or metastatic tumors. We examine the genomic landscape of early-stage melanomas diagnosed prior to the modern era of immunological treatments. Untreated cases with Stage II/III cutaneous melanoma were identified from institutions throughout the United States, Australia and Spain. FFPE tumor sections were profiled for mutation, methylation and microRNAs. Preliminary results from mutation profiling and clinical pathologic correlates show the distribution of four driver mutation sub-types: 31% BRAF; 18% NRAS; 21% NF1; 26% Triple Wild Type. BRAF mutant tumors had younger age at diagnosis, more associated nevi, more tumor infiltrating lymphocytes, and fewer thick tumors although at generally more advanced stage. NF1 mutant tumors were frequent on the head/neck in older patients with severe solar elastosis, thicker tumors but in earlier stages. Triple Wild Type tumors were predominantly male, frequently on the leg, with more perineural invasion. Mutations in TERT, TP53, CDKN2A and ARID2 were observed often, with TP53 mutations occurring particularly frequently in the NF1 sub-type. The InterMEL study will provide the most extensive multi-omic profiling of early-stage melanoma to date. Initial results demonstrate a nuanced understanding of the mutational and clinicopathological landscape of these early-stage tumors.

Indexed as

MelanomaMicroRNAsSkin NeoplasmsAgedCutaneous Malignant MelanomaFemaleHumansMaleMutationProto-Oncogene Proteins B-rafMicroRNAsProto-Oncogene Proteins B-rafmulti-omic profilingprimary melanomaprognostic modelstumor mutations

Identifiers

PMID35876628
PMCPMC9640183
OpenAlexW4287377570

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.