Evidence map›Paper›PMID 35876299›Full record

ArticleMolecular genetics & genomic medicine2022

Mutation spectrum in a cohort with familial exudative vitreoretinopathy.

Ning Qu, Wei Li, Dong-Ming Han, Jia-Yu Gao, Zheng-Tao Yang, Li Jiang, Tian-Bin Liu, Yan-Xian Chen, Xiao-Sen Jiang, Liang Zhou and 2 more

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ning QuGuangdong and Shenzhen Key Laboratory of Reproductive Medicine and Genetics, The Center of Reproductive Medicine, Peking University Shenzhen Hospital, Shenzhen, China.
Wei LiCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.ORCID 0000-0001-5993-7912
Dong-Ming HanCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Jia-Yu GaoCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Zheng-Tao YangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Li JiangDepartment of Ophthalmology, Laizhou City People's Hospital, Yantai, China.
Tian-Bin LiuCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Yan-Xian ChenGuangdong and Shenzhen Key Laboratory of Reproductive Medicine and Genetics, The Center of Reproductive Medicine, Peking University Shenzhen Hospital, Shenzhen, China.
Xiao-Sen JiangCollege of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.
Liang ZhouGuangdong and Shenzhen Key Laboratory of Reproductive Medicine and Genetics, The Center of Reproductive Medicine, Peking University Shenzhen Hospital, Shenzhen, China.
Ji-Hong WuDepartment of Ophthalmology, Eye & ENT Hospital of Fudan University, Shanghai, China.
Xin HuangDepartment of Ophthalmology, Eye & ENT Hospital of Fudan University, Shanghai, China.
University of Chinese Academy of Sciences · CNPeking University Shenzhen Hospital · CNEye & ENT Hospital of Fudan University · CNYantaishan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeTo expand the mutation spectrum of patients with familial exudative vitreoretinopathy (FEVR) disease.

participants74 probands (53 families and 21 sporadic probands) with familial exudative vitreoretinopathy (FEVR) disease and their available family members (n = 188) were recruited for sequencing.

methodsPanel-based targeted screening was performed on all subjects. Before sanger sequencing, variants of LRP5, NDP, FZD4, TSPAN12, ZNF408, KIF11, RCBTB1, JAG1, and CTNNA1 genes were verified by a series of bioinformatics tools and genotype-phenotype co-segregation analysis.

results40.54% (30/74) of the probands were sighted to possess at least one etiological mutation of the nine FEVR-causative genes. The etiological mutation detection rate was 37.74% (20/53) in family-attainable probands while 47.62% (10/21) in sporadic cases. The diagnosis rate of patients in the early-onset subgroup (≤5 years old, 45.4%) is higher than that of the children or adolescence-onset subgroup (6-16 years old, 42.1%) and the late-onset subgroup (≥17 years old, 39.4%). A total of 36 etiological mutations were identified in this study, comprising 26 novel mutations and 10 reported mutations. LRP5 was the most prevalent mutant gene among the 36 mutation types with a percentage of 41.67% (15/36). Followed by FZD4 (10/36, 27.78%), TSPAN12 (5/36, 13.89%), NDP (4/36, 11.11%), KIF11 (1/36, 2.78%), and RCBTB1 (1/36, 2.78%). Among these mutations, 63.89% (23/36) were missense mutations, 25.00% (9/36) were frameshift mutations, 5.56% (2/36) were splicing mutations, 5.56% (2/36) were nonsense mutations. Moreover, the clinical pathogenicity of these variants was defined according to American College of Medical Genetics (ACMG) and genomics guidelines: 41.67% (15/36) were likely pathogenic variants, 27.78% (10/36) pathogenic variants, 30.55% (11/36) variants of uncertain significance. No etiological mutations discovered in the ZNF408, JAG1, and CTNNA1 genes in this FEVR cohort.

conclusionsWe systematically screened nine FEVR disease-associated genes in a cohort of 74 Chinese probands with FEVR disease. With a detection rate of 40.54%, 36 etiological mutations of six genes were authenticated in 30 probands, including 26 novel mutations and 10 reported mutations. The most prevalent mutated gene is LRP5, followed by FZD4, TSPAN12, NDP, KIF11, and RCBTB1. In total, a de novo mutation was confirmed. Our study significantly clarified the mutation spectrum of variants bounded up to FEVR disease.

Indexed as

Low Density Lipoprotein Receptor-Related Protein-5Retinal DiseasesCodon, NonsenseDNA-Binding ProteinsDNA Mutational AnalysisFamilial Exudative VitreoretinopathiesFrizzled ReceptorsGuanine Nucleotide Exchange FactorsHumansMutationPedigreeTetraspaninsTranscription FactorsCodon, NonsenseDNA-Binding ProteinsFrizzled ReceptorsFZD4 protein, humanGuanine Nucleotide Exchange FactorsLow Density Lipoprotein Receptor-Related Protein-5RCBTB1 protein, humanTetraspaninsTranscription FactorsTSPAN12 protein, humanZNF408 protein, humanFEVRgenotype-phenotype analysismutation Spectrumtargeted sequencing

Identifiers

PMID35876299
PMCPMC9482396
OpenAlexW4287306503

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.