Evidence map›Paper›PMID 35875189›Full record

ArticleInformatics in medicine unlocked2021

An approach for open multivariate analysis of integrated clinical and environmental exposures data.

Karamarie Fecho, Perry Haaland, Ashok Krishnamurthy, Bo Lan, Stephen A Ramsey, Patrick L Schmitt, Priya Sharma, Meghamala Sinha, Hao Xu

Open access · goldAbstract read
In one paragraph

Article in Informatics in medicine unlocked, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Karamarie FechoRenaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Perry HaalandDepartment of Statistics and Operations Research, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Ashok KrishnamurthyRenaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Bo LanUNC Highway Safety Research Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Stephen A RamseyOregon State University, Corvallis, OR, USA.
Patrick L SchmittRenaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Priya SharmaRenaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Meghamala SinhaOregon State University, Corvallis, OR, USA.
Hao XuRenaissance Computing Institute, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
University of North Carolina at Chapel Hill · USOregon State University · US

Funding

Re-Entry Supplement: Investigation of Oral Microbial Enzymes for the Detection and Treatment of Periodontal DiseaseUL1TR002489 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BUSE, JOHN BERNARD, SHAHEEN, NICHOLAS J · 2018 to 2022
$48.6M
Personalized Environment and Genes Study (PEGS)ZICES103354 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI HALL, JANET · 2020 to 2024
$7.0M
Biomedical Data Translator Development of Autonomous Relay Agent: ARAXOT2TR003428 · NCATS · OREGON STATE UNIVERSITY · PI DEUTSCH, ERIC, KOSLICKI, DAVID · 2020 to 2024
$5.6M
ICEES+ Knowledge Provider: Leveraging Open Clinical and Environmental Data to Accelerate and Drive Innovation in Translational Research and Clinical Care.OT2TR003430 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AHALT, STANLEY CARLTON, KRISHNAMURTHY, ASHOK KUMAR · 2020 to 2024
$4.4M
Biomedical Data Translator Technical Feasibility Assessment and Architecture DesignOT3TR002020 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI AHALT, STANLEY CARLTON, TROPSHA, ALEXANDER · 2016 to 2019
$3.1M
Intramural NIH HHS ZIC ES103354NCATS NIH HHS OT2 TR003428NCATS NIH HHS OT2 TR003430NCATS NIH HHS OT3 TR002020NCATS NIH HHS UL1 TR002489
6 · The paper itself

Abstract

The Integrated Clinical and Environmental Exposures Service (ICEES) provides regulatory-compliant open access to sensitive patient data that have been integrated with public exposures data. ICEES was designed initially to support dynamic cohort creation and bivariate contingency tests. The objective of the present study was to develop an open approach to support multivariate analyses using existing ICEES functionalities and abiding by all regulatory constraints. We first developed an open approach for generating a multivariate table that maintains contingencies between clinical and environmental variables using programmatic calls to the open ICEES application programming interface. We then applied the approach to data on a large cohort (N = 22,365) of patients with asthma or related conditions and generated an eight-feature table. Due to regulatory constraints, data loss was incurred with the incorporation of each successive feature variable, from a starting sample size of N = 22,365 to a final sample size of N = 4,556 (20.4%), but data loss was < 10% until the addition of the final two feature variables. We then applied a generalized linear model to the subsequent dataset and focused on the impact of seven select feature variables on asthma exacerbations, defined as annual emergency department or inpatient visits for respiratory issues. We identified five feature variables-sex, race, obesity, prednisone, and airborne particulate exposure-as significant predictors of asthma exacerbations. We discuss the advantages and disadvantages of ICEES open multivariate analysis and conclude that, despite limitations, ICEES can provide a valuable resource for open multivariate analysis and can serve as an exemplar for regulatory-compliant informatic solutions to open patient data, with capabilities to explore the impact of environmental exposures on health outcomes.

Indexed as

AsthmaEnvironmental exposuresEnvironmental healthGeneralized linear modelOpen clinical dataOpen science

Identifiers

PMID35875189
PMCPMC9302917
OpenAlexW3200256457

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.