Evidence map›Paper›PMID 35874460›Full record

ArticleInformatics in medicine unlocked2022

Use of automatic SQL generation interface to enhance transparency and validity of health-data analysis.

Kavishwar B Wagholikar, David Zelle, Layne Ainsworth, Kira Chaney, Alexander J Blood, Angela Miller, Rupendra Chulyadyo, Michael Oates, William J Gordon, Samuel J Aronson and 2 more

Abstract read
In one paragraph

Article in Informatics in medicine unlocked, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kavishwar B WagholikarHarvard Medical School, Boston, MA, USA.
David ZelleBrigham and Women's Hospital, Boston, MA, USA.
Layne AinsworthMass General Brigham, Boston, MA, USA.
Kira ChaneyBrigham and Women's Hospital, Boston, MA, USA.
Alexander J BloodHarvard Medical School, Boston, MA, USA.
Angela MillerMassachusetts General Hospital, Boston, MA, USA.
Rupendra ChulyadyoMass General Brigham, Boston, MA, USA.
Michael OatesMass General Brigham, Boston, MA, USA.
William J GordonHarvard Medical School, Boston, MA, USA.
Samuel J AronsonMass General Brigham, Boston, MA, USA.
Benjamin M SciricaHarvard Medical School, Boston, MA, USA.
Shawn N MurphyHarvard Medical School, Boston, MA, USA.

Funding

A framework to stratify patient cohorts for clinical managementR01HL151643 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI WAGHOLIKAR, KAVISHWAR B. · 2020 to 2024
$4.1M
Developing i2b2 into a Health Innovation Platform for Clinical Decision Support in the Genomics EraR01HG009174 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI ARONSON, SAMUEL JEFFREY, MACRAE, CALUM A. · 2016 to 2019
$2.9M
A Framework to Enhance Decision Support by Invoking NLP: Methods and ApplicationsR00LM011575 · NLM · MASSACHUSETTS GENERAL HOSPITAL · PI WAGHOLIKAR, KAVISHWAR B. · 2016 to 2018
$749k
NHGRI NIH HHS R01 HG009174NHLBI NIH HHS R01 HL151643NLM NIH HHS R00 LM011575
6 · The paper itself

Abstract

Analysis of health data typically requires development of queries using structured query language (SQL) by a data-analyst. As the SQL queries are manually created, they are prone to errors. In addition, accurate implementation of the queries depends on effective communication with clinical experts, that further makes the analysis error prone. As a potential resolution, we explore an alternative approach wherein a graphical interface that automatically generates the SQL queries is used to perform the analysis. The latter allows clinical experts to directly perform complex queries on the data, despite their unfamiliarity with SQL syntax. The interface provides an intuitive understanding of the query logic which makes the analysis transparent and comprehensible to the clinical study-staff, thereby enhancing the transparency and validity of the analysis. This study demonstrates the feasibility of using a user-friendly interface that automatically generate SQL for analysis of health data. It outlines challenges that will be useful for designing user-friendly tools to improve transparency and reproducibility of data analysis.

Indexed as

DatabasesGraphical user-interfaceReproducibility of analysisStructured query languageValidity of analysis

Identifiers

PMID35874460
PMCPMC9306316

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.