Evidence map›Paper›PMID 35873797›Full record

ArticleOxidative medicine and cellular longevity2022

Molecular Evolution of the Activating Transcription Factors Shapes the Adaptive Cellular Responses to Oxidative Stress.

Hafiz Ishfaq Ahmad, Asia Iqbal, Nabeel Ijaz, Muhammad Irfan Ullah, Akhtar Rasool Asif, Abdur Rahman, Tahir Mehmood, Ghulam Haider, Shakeel Ahmed, Samy F Mahmoud and 4 more

RetractedOpen access · hybridAbstract readRetracted Publication
In one paragraph

Article in Oxidative medicine and cellular longevity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 5 countries.

Hafiz Ishfaq AhmadDepartment of Animal Breeding and Genetics, University of Veterinary and Animal Sciences, Lahore, Pakistan.ORCID https://orcid.org/0000-0002-9206-2596
Asia IqbalDepartment of Wild Life and Ecology, University of Veterinary and Animal Sciences, Lahore, Pakistan.
Nabeel IjazDepartment of Clinical Science, Faculty of Veterinary Sciences, Bahauddin Zakariya University, Multan, Pakistan.
Muhammad Irfan UllahDepartment of Pathobiology, Faculty of Veterinary Sciences, Bahauddin Zakariya University, Multan, Pakistan.
Akhtar Rasool AsifDepartment of Animal Sciences, University of Veterinary and Animal Sciences, Jhang, Pakistan.
Abdur RahmanDepartment of Animal Sciences, University of Veterinary and Animal Sciences, Jhang, Pakistan.
Tahir MehmoodCentre for Applied Molecular Biology (CAMB), University of the Punjab, Lahore 53700, Punjab, Pakistan.
Ghulam HaiderDepartment of Biological Sciences, University of Veterinary and Animal Sciences, Ravi Campus, Pattoki, Pakistan.
Shakeel AhmedInstituto de Farmacia, Facultad de Ciencias, Universidad Austral de Chile, Campus Isla Teja, 5090000 Valdivia, Chile.
Samy F MahmoudDepartment of Biotechnology, College of Science, Taif University, P.O. Box 11099, Taif 21944, Saudi Arabia.
Fatimah Othman AlghamdiNational Center for Biotechnology King Abdulaziz City for Science and Technology Riyadh, Saudi Arabia.
Hala Abdulrahman Al AmariNational Center for Biotechnology King Abdulaziz City for Science and Technology Riyadh, Saudi Arabia.
Mario Juan SimirgiotisInstituto de Farmacia, Facultad de Ciencias, Universidad Austral de Chile, Campus Isla Teja, 5090000 Valdivia, Chile.
Jinping ChenGuangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong, Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, Guangdong, China.ORCID https://orcid.org/0000-0002-0808-6617
University of Veterinary and Animal Sciences · PKAustral University of Chile · CLBahauddin Zakariya University · PKKing Abdulaziz City for Science and Technology · SAAfyon Kocatepe University · TRGuangdong Academy of Sciences · CNHuazhong Agricultural University · CNTaif University · SAUniversity of the Punjab · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Reactive oxygen species (ROS) play an essential part in physiology of individual cell. ROS can cause damage to various biomolecules, including DNA. The systems that have developed to harness the impacts of ROS are antique evolutionary adaptations that are intricately linked to almost every aspect of cellular function. This research reveals the idea that during evolution, rather than being largely conserved, the molecular pathways reacting to oxidative stress have intrinsic flexibility. The coding sequences of the ATF2, ATF3, ATF4, and ATF6 genes were aligned to examine selection pressure on the genes, which were shown to be very highly conserved among vertebrate species. A total of 33 branches were explicitly evaluated for their capacity to diversify selection. After accounting for multiple testing, significance was determined using the likelihood ratio test with a threshold of

Indexed as

Evolution, MolecularSelection, GeneticActivating Transcription FactorsOxidative StressPhylogenyReactive Oxygen SpeciesActivating Transcription FactorsReactive Oxygen Species

Identifiers

PMID35873797
PMCPMC9300285
OpenAlexW4285394770

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.