Evidence map›Paper›PMID 35873314›Full record

ArticleRSC advances2022

Virtual screening of natural products against 5-enolpyruvylshikimate-3-phosphate synthase using the Anagreen herbicide-like natural compound library.

Maycon Vinicius Damasceno de Oliveira, Gilson Mateus Bittencourt Fernandes, Kauê S da Costa, Serhii Vakal, Anderson H Lima

Abstract read
In one paragraph

Article in RSC advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. The Essential Oil ofPlants (Basel, Switzerland) · 2023
    Article
  7. Article
  8. Review
  9. Molecular characterization andFrontiers in chemistry · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Maycon Vinicius Damasceno de OliveiraLaboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará 66075-110 Belém Pará Brazil anderson@ufpa.br.ORCID https://orcid.org/0000-0003-2263-2124
Gilson Mateus Bittencourt FernandesLaboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará 66075-110 Belém Pará Brazil anderson@ufpa.br.ORCID https://orcid.org/0000-0002-7149-8032
Kauê S da CostaInstitute of Biodiversity, Federal University of Western Pará Santarém Pará Brazil kaue.costa@ufopa.edu.br.ORCID https://orcid.org/0000-0002-2735-8016
Serhii VakalStructural Bioinformatics Laboratory, Biochemistry, Faculty of Science and Engineering, Åbo Akademi University Turku Finland serhii.vakal@abo.fi.ORCID https://orcid.org/0000-0002-1549-0394
Anderson H LimaLaboratório de Planejamento e Desenvolvimento de Fármacos, Instituto de Ciências Exatas e Naturais, Universidade Federal do Pará 66075-110 Belém Pará Brazil anderson@ufpa.br.ORCID https://orcid.org/0000-0002-8451-9912

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The shikimate pathway enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) catalyzes a reaction involved in the production of amino acids essential for plant growth and survival. EPSPS is the main target of glyphosate, a broad-spectrum herbicide that acts as a competitive inhibitor concerning phosphoenolpyruvate (PEP), which is the natural substrate of EPSPS. In the present study, we introduce a natural compound library, named Anagreen, which is a compendium of herbicide-like compounds obtained from different natural product databases. Herein, we combined the structure- and ligand-based virtual screening strategies to explore Anagreen against EPSPS using the structure of glyphosate complexed with a T102I/P106S mutant of EPSPS from

Identifiers

PMID35873314
PMCPMC9240924

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.