ArticlePlant biotechnology journal2022
Whole-plant microbiome profiling reveals a novel geminivirus associated with soybean stay-green disease.
Article in Plant biotechnology journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
20 citing papers in PubMed, 1 synthesis or guideline pooled it, 44 citations in OpenAlex.
- Development and research trends of stay-green biology in legumes: a bibliometric and visual analysis over three decades.Frontiers in genetics · 2026Pooled it
- Plant viruses and the microbiome: a complex network shaping plant health and disease resistance.Archives of virology · 2026Review
- Plant Functional Traits or Microbiomes Associated with Diseases, Pests, Human Activities and Climate Change.Plants (Basel, Switzerland) · 2026Article
- Metagenomic Study of the Grapevine Decline Detected a Cocktail of Fungi Associated with Grapevine Trunk Diseases.Plants (Basel, Switzerland) · 2025Article
- Synthetic Polyploidisation Enhances Fusarium graminearum Tolerance in Wheat by Reshaping the Transcriptome and Strengthening the Microbiome.Plant biotechnology journal · 2025Article
- Functional dynamics reveal the response of the crabapple (mSystems · 2025Article
- Screening and mechanistic analysis of soybean varieties resistant to stay-green syndrome caused by the soybean stay-green-associated virus.Plant biotechnology journal · 2025Article
- The AP2/ERF transcription factor GmTINY mediates ethylene regulation of Rhg1-conferred resistance against soybean cyst nematode.Plant communications · 2025Article
- Evaluation of soybean germplasms for resistance to stay-green syndrome.Scientific reports · 2025Article
- Influence of genotype and soil on specialized metabolites production and bacterial microbiota associated to wild hop (Frontiers in plant science · 2025Article
- Beyond correlation: Understanding the causal link between microbiome and plant health.Heliyon · 2024Review
- Decoding the microbiome for sustainable agriculture.aBIOTECH · 2024Article
- Article
- Thaumatin-like Proteins in Legumes: Functions and Potential Applications-A Review.Plants (Basel, Switzerland) · 2024Review
- Application of High-Throughput Sequencing for Comprehensive Virome Profiling in Grapevines Shows Yellows in Iran.Viruses · 2024Article
- Editorial: Microbiome associated with plant pathogens, pathogenesis, and their applications in developing sustainable agriculture.Frontiers in microbiology · 2024Article
- Plant immunity in soybean: progress, strategies, and perspectives.Molecular breeding : new strategies in plant improvement · 2023Article
- Phytoremediation of isoproturon-contaminated sites by transgenic soybean.Plant biotechnology journal · 2023Article
- Deciphering key factors in pathogen-suppressive microbiome assembly in the rhizosphere.Frontiers in plant science · 2023Review
- The Characterization of Three Novel Insect-Specific Viruses Discovered in the Bean Bug,Viruses · 2022Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
14 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Microbiota colonize every accessible plant tissue and play fundamental roles in plant growth and health. Soybean stay-green syndrome (SGS), a condition that causes delayed leaf senescence (stay-green), flat pods and abnormal seeds of soybean, has become the most serious disease of soybean in China. However, the direct cause of SGS is highly debated, and little is known about how SGS affect soybean microbiome dynamics, particularly the seed microbiome. We studied the bacterial, fungal, and viral communities associated with different soybean tissues with and without SGS using a multi-omics approach, and investigated the possible pathogenic agents associated with SGS and how SGS affects the assembly and functions of plant-associated microbiomes. We obtained a comprehensive view of the composition, function, loads, diversity, and dynamics of soybean microbiomes in the rhizosphere, root, stem, leaf, pod, and seed compartments, and discovered that soybean SGS was associated with dramatically increased microbial loads and dysbiosis of the bacterial microbiota in seeds. Furthermore, we identified a novel geminivirus that was strongly associated with soybean SGS, regardless of plant cultivar, sampling location, or harvest year. This whole-plant microbiome profiling of soybean provides the first demonstration of geminivirus infection associated with microbiota dysbiosis, which might represent a general microbiological symptom of plant diseases.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.