Evidence map›Paper›PMID 35869422›Full record

ArticleBMC plant biology2022

Identification and characterization of a new geminivirus from soybean plants and determination of V2 as a pathogenicity factor and silencing suppressor.

Qinglun Li, Yuyang Zhang, Weiguo Lu, Xiaoyu Han, Lingling Yang, Yajuan Shi, Honglian Li, Linlin Chen, Yiqing Liu, Xue Yang and 1 more

Abstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Geminivirus diseases of legumes in India: current status and approaches for management.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Qinglun LiCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Yuyang ZhangCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Weiguo LuInstitute of Crops Molecular Breeding, Henan Academy of Agricultural Sciences/ National Centre for Plant Breeding, Zhengzhou, 450002, China.
Xiaoyu HanCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Lingling YangCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Yajuan ShiCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Honglian LiCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Linlin ChenCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China.
Yiqing LiuGuangdong Baiyun University, Guangzhou, 510550, China.
Xue YangCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China. yangxuepphappy@126.com.
Yan ShiCollege of Plant Protection, Henan Agricultural University, Zhengzhou, 450002, China. shiyan00925@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSoybean is one of the four major crops in China. The occurrence of viruses in soybean causes significant economic losses.

resultsIn this study, the soybean leaves from stay-green plants showing crinkle were collected for metatranscriptomic sequencing. A novel geminivirus, tentatively named soybean geminivirus A (SGVA), was identified in soybean stay-green plants. Sequence analysis of the full-length SGVA genome revealed a genome of 2762 nucleotides that contain six open reading frames. Phylogenetic analyses revealed that SGVA was located adjacent to the clade of begomoviruses in both the full genome-based and C1-based phylogenetic tree, while in the CP-based phylogenetic tree, SGVA was located adjacent to the clade of becurtoviruses. SGVA was proposed as a new recombinant geminivirus. Agroinfectious clone of SGVA was constructed. Typical systemic symptoms of curly leaves were observed at 11 dpi in Nicotiana benthamiana plants and severe dwarfism was observed after 3 weeks post inoculation. Expression of the SGVA encoded V2 and C1 proteins through a potato virus X (PVX) vector caused severe symptoms in N. benthamiana. The V2 protein inhibited local RNA silencing in co-infiltration assays in GFP transgenic 16C N. benthamiana plants. Further study revealed mild symptoms in N. benthamiana plants inoculated with SGVA-ZZ

conclusionsThis work identified a new geminivirus in soybean stay-green plants and determined V2 as a pathogenicity factor and silencing suppressor.

Indexed as

FabaceaeGeminiviridaeGlycine maxNicotianaPhylogenyPlant DiseasesPlants, Genetically ModifiedVirulence FactorsVirulence FactorsGenetic variabilityPathogenicityRNA silencing suppressorSoybean geminivirus A (SGVA)V2 protein

Identifiers

PMID35869422
PMCPMC9308217

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.