Evidence map›Paper›PMID 35869152›Full record

ArticleScientific reports2022

Prediction performance and fairness heterogeneity in cardiovascular risk models.

Uri Kartoun, Shaan Khurshid, Bum Chul Kwon, Aniruddh P Patel, Puneet Batra, Anthony Philippakis, Amit V Khera, Patrick T Ellinor, Steven A Lubitz, Kenney Ng

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Uri Kartoun *Center for Computational Health, IBM Research, 314 Main St., Cambridge, MA, 02142, USA.
Shaan Khurshid *Cardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Bum Chul KwonCenter for Computational Health, IBM Research, 314 Main St., Cambridge, MA, 02142, USA.
Aniruddh P PatelCardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Puneet BatraData Sciences Platform, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Anthony PhilippakisCardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Amit V KheraCardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Patrick T EllinorCardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Steven A LubitzCardiovascular Disease Initiative, Broad Institute of the Massachusetts Institute of Technology and Harvard University, Cambridge, MA, USA.
Kenney NgCenter for Computational Health, IBM Research, 314 Main St., Cambridge, MA, 02142, USA. kenney.ng@us.ibm.com.
Massachusetts Institute of Technology · USComputational Physics (United States) · USBroad Institute · USHarvard University · USMassachusetts General Hospital · US

Funding

IDENTIFICATION OF COMMON GENETIC VARIANTS FOR ATRIAL FIBRILLATION AND PR INTERVALR01HL092577 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI BENJAMIN, EMELIA J., ELLINOR, PATRICK THOMAS · 2009 to 2025
$20.6M
MULTIDISCIPLINARY RESEARCH TRAINING IN CARDIOLOGYT32HL007208 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Patrick Thomas Ellinor, David E Sosnovik · 1985 to 2026
$16.1M
Genomics of Cardiac ArrhythmiasR01HL139731 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ELLINOR, PATRICK THOMAS · 2018 to 2022
$3.3M
Mentoring in Arrhythmia ResearchK24HL105780 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI ELLINOR, PATRICK THOMAS · 2011 to 2020
$1.2M
Polygenic prediction of common, complex diseasesK08HG010155 · NHGRI · MASSACHUSETTS GENERAL HOSPITAL · PI KHERA, AMIT VIKRAM · 2018 to 2021
$1.1M
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NHGRI NIH HHS K08 HG010155NHLBI NIH HHS K24 HL105780NHLBI NIH HHS R01 HL092577NHLBI NIH HHS R01 HL139731NHLBI NIH HHS T32 HL007208
6 · The paper itself

Abstract

Prediction models are commonly used to estimate risk for cardiovascular diseases, to inform diagnosis and management. However, performance may vary substantially across relevant subgroups of the population. Here we investigated heterogeneity of accuracy and fairness metrics across a variety of subgroups for risk prediction of two common diseases: atrial fibrillation (AF) and atherosclerotic cardiovascular disease (ASCVD). We calculated the Cohorts for Heart and Aging in Genomic Epidemiology Atrial Fibrillation (CHARGE-AF) score for AF and the Pooled Cohort Equations (PCE) score for ASCVD in three large datasets: Explorys Life Sciences Dataset (Explorys, n = 21,809,334), Mass General Brigham (MGB, n = 520,868), and the UK Biobank (UKBB, n = 502,521). Our results demonstrate important performance heterogeneity across subpopulations defined by age, sex, and presence of preexisting disease, with fairly consistent patterns across both scores. For example, using CHARGE-AF, discrimination declined with increasing age, with a concordance index of 0.72 [95% CI 0.72-0.73] for the youngest (45-54 years) subgroup to 0.57 [0.56-0.58] for the oldest (85-90 years) subgroup in Explorys. Even though sex is not included in CHARGE-AF, the statistical parity difference (i.e., likelihood of being classified as high risk) was considerable between males and females within the 65-74 years subgroup with a value of - 0.33 [95% CI - 0.33 to - 0.33]. We also observed weak discrimination (i.e., < 0.7) and suboptimal calibration (i.e., calibration slope outside of 0.7-1.3) in large subsets of the population; for example, all individuals aged 75 years or older in Explorys (17.4%). Our findings highlight the need to characterize and quantify the behavior of clinical risk models within specific subpopulations so they can be used appropriately to facilitate more accurate, consistent, and equitable assessment of disease risk.

Indexed as

AtherosclerosisAtrial FibrillationCardiovascular DiseasesFemaleHeart Disease Risk FactorsHumansMaleMiddle AgedRisk AssessmentRisk Factors

Identifiers

PMID35869152
PMCPMC9307639
OpenAlexW4286487550

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.