Evidence map›Paper›PMID 35867852›Full record

ArticleThe Journal of infectious diseases2023

Novel Human Parechovirus 3 Diversity, Recombination, and Clinical Impact Across 7 Years: An Australian Story.

Seweryn Bialasiewicz, Meryta May, Sarah Tozer, Rebecca Day, Anne Bernard, Julian Zaugg, Kyana Gartrell, Soren Alexandersen, Anthony Chamings, Claire Y T Wang and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. First whole genome sequencing and analysis of human parechovirus type 3 causing a healthcare-associated outbreak among neonates in Hungary.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 3 countries.

Seweryn BialasiewiczSchool of Chemistry and Molecular Biosciences, The University of Queensland, Australian Centre for Ecogenomics, St Lucia, Australia.ORCID 0000-0001-9474-6943
Meryta MayChildren's Health Queensland Hospital and Health Service, Centre for Children's Health Research, South Brisbane, Australia.
Sarah TozerChildren's Health Queensland Hospital and Health Service, Centre for Children's Health Research, South Brisbane, Australia.
Rebecca DayChildren's Health Queensland Hospital and Health Service, Centre for Children's Health Research, South Brisbane, Australia.
Anne BernardQCIF Bioinformatics, Institute for Molecular Bioscience, The University of Queensland, St Lucia, Australia.
Julian ZauggSchool of Chemistry and Molecular Biosciences, The University of Queensland, Australian Centre for Ecogenomics, St Lucia, Australia.
Kyana GartrellChildren's Health Queensland Hospital and Health Service, Centre for Children's Health Research, South Brisbane, Australia.
Soren AlexandersenSchool of Medicine, Deakin University, Geelong, Australia.
Anthony ChamingsSchool of Medicine, Deakin University, Geelong, Australia.
Claire Y T WangChildren's Health Queensland Hospital and Health Service, Centre for Children's Health Research, South Brisbane, Australia.
Julia ClarkChildren's Health Queensland Hospital and Health Service, South Brisbane, Australia.
Keith GrimwoodSchool of Medicine and Dentistry, Menzies Health Institute Queensland, Griffith University, Southport, Australia.
Claire HeneyDepartment of Microbiology, Pathology Queensland, Herston, Australia.
Luregn J SchlapbachChildren's Health Queensland Hospital and Health Service, South Brisbane, Australia.
Robert S WareSchool of Medicine and Dentistry, Menzies Health Institute Queensland, Griffith University, Southport, Australia.
David SpeersDepartment of Microbiology, PathWest Laboratory Medicine Western Australia, Queen Elizabeth II Medical Centre, Nedlands, Australia.
Ross M AndrewsNational Centre for Epidemiology and Population Health, Australian National University, Canberra, Australia.
Stephen LambertChild Health Research Centre, The University of Queensland, South Brisbane, Australia.
Children’s Health Queensland Hospital and Health Service · AUThe University of Queensland · AUGriffith University · AUAustralian National University · AUDeakin University · AUQueensland Health · AUStatens Serum Institut · DKThe University of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundA novel human parechovirus 3 Australian recombinant (HPeV3-AR) strain emerged in 2013 and coincided with biennial outbreaks of sepsis-like illnesses in infants. We evaluated the molecular evolution of the HPeV3-AR strain and its association with severe HPeV infections.

methodsHPeV3-positive samples collected from hospitalized infants aged 5-252 days in 2 Australian states (2013-2020) and from a community-based birth cohort (2010-2014) were sequenced. Coding regions were used to conduct phylogenetic and evolutionary analyses. A recombinant-specific polymerase chain reaction was designed and utilized to screen all clinical and community HPeV3-positive samples.

resultsComplete coding regions of 54 cases were obtained, which showed the HPeV3-AR strain progressively evolving, particularly in the 3' end of the nonstructural genes. The HPeV3-AR strain was not detected in the community birth cohort until the initial outbreak in late 2013. High-throughput screening showed that most (>75%) hospitalized HPeV3 cases involved the AR strain in the first 3 clinical outbreaks, with declining prevalence in the 2019-2020 season. The AR strain was not statistically associated with increased clinical severity among hospitalized infants.

conclusionsHPeV3-AR was the dominant strain during the study period. Increased hospital admissions may have been from a temporary fitness advantage and/or increased virulence.

Indexed as

ParechovirusPicornaviridae InfectionsAustraliaHumansInfantPhylogenyRecombination, GeneticAustraliacommunityHPeV3infantsparechoviruspediatricpicornavirusrecombinationsepsisviral evolution

Identifiers

PMID35867852
PMCPMC9833435
OpenAlexW4286587094

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.