Evidence map›Paper›PMID 35867819›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Cryo-EM structures of alphavirus conformational intermediates in low pH-triggered prefusion states.

Chun-Liang Chen, Thomas Klose, Chengqun Sun, Arthur S Kim, Geeta Buda, Michael G Rossmann, Michael S Diamond, William B Klimstra, Richard J Kuhn

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Chun-Liang ChenDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.ORCID 0000-0003-4625-4340
Thomas KloseDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.ORCID 0000-0002-2150-9792
Chengqun SunDepartment of Immunology, University of Pittsburgh, Pittsburgh, PA 15261.
Arthur S KimDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0003-4101-6642
Geeta BudaDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Michael G RossmannDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.
Michael S DiamondDepartment of Medicine, Washington University School of Medicine, St. Louis, MO 63110.
William B KlimstraDepartment of Immunology, University of Pittsburgh, Pittsburgh, PA 15261.
Richard J KuhnDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907.ORCID 0000-0003-4148-1026
Purdue University West Lafayette · USUniversity of Pittsburgh · USWashington University in St. Louis · US

Funding

Specific and Broadly Active Monoclonal Antibody Therapeutics Against The FilovirusesU19AI142790 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SAPHIRE, ERICA OLLMANN · 2019 to 2023
$40.0M
Structural Studies of TogavirusesR01AI095366 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J. · 2012 to 2023
$6.8M
Molecular Mechanisms of Eastern Equine Encephalitis Virus PathogenesisR01AI095436 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLIMSTRA, WILLIAM B · 2012 to 2022
$4.5M
LDLRAD3 Receptor Interaction with Venezuelan Equine Encephalitis VirusR01AI164653 · NIAID · WASHINGTON UNIVERSITY · PI DIAMOND, MICHAEL S, FREMONT, DAVED H. · 2021 to 2025
$3.8M
An Informed Approach to Live Attenuated Vaccines against Encephalitis AlphavirusesR01AI153209 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLIMSTRA, WILLIAM B · 2020 to 2024
$2.9M
NIAID NIH HHS R01 AI095366NIAID NIH HHS R01 AI095436NIAID NIH HHS R01 AI153209NIAID NIH HHS R01 AI164653NIAID NIH HHS U19 AI142790
6 · The paper itself

Abstract

Alphaviruses can cause severe human arthritis and encephalitis. During virus infection, structural changes of viral glycoproteins in the acidified endosome trigger virus-host membrane fusion for delivery of the capsid core and RNA genome into the cytosol to initiate virus translation and replication. However, mechanisms by which E1 and E2 glycoproteins rearrange in this process remain unknown. Here, we investigate prefusion cryoelectron microscopy (cryo-EM) structures of eastern equine encephalitis virus (EEEV) under acidic conditions. With models fitted into the low-pH cryo-EM maps, we suggest that E2 dissociates from E1, accompanied by a rotation (∼60°) of the E2-B domain (E2-B) to expose E1 fusion loops. Cryo-EM reconstructions of EEEV bound to a protective antibody at acidic and neutral pH suggest that stabilization of E2-B prevents dissociation of E2 from E1. These findings reveal conformational changes of the glycoprotein spikes in the acidified host endosome. Stabilization of E2-B may provide a strategy for antiviral agent development.

Indexed as

Encephalitis Virus, Eastern EquineViral Envelope ProteinsAntiviral AgentsCryoelectron MicroscopyHydrogen-Ion ConcentrationProtein ConformationProtein StabilityAntiviral AgentsViral Envelope Proteinsalphaviruscryoelectron microscopyEEEVendosomeinfection

Identifiers

PMID35867819
PMCPMC9335222
OpenAlexW4286586545

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.