Evidence map›Paper›PMID 35867471›Full record

ArticleMicrobiology spectrum2022

Diagnostic Performance Assessment of Saliva RT-PCR and Nasopharyngeal Antigen for the Detection of SARS-CoV-2 in Peru.

Roger I Calderón, Tulip A Jhaveri, Marco A Tovar, J Santiago Palomino, Nadia N Barreda, Oswaldo M Sanabria, Jesús Peinado, Claudio Ramirez, L Fernando Llanos Zavalaga, Gissela Valderrama and 4 more

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Roger I Calderón *Socios En Salud Sucursal Peru, Lima, Peru.ORCID 0000-0001-8932-0489
Tulip A Jhaveri *Division of Infectious Diseases, Department of Medicine, University of Mississippi Medical Center, Jackson, Mississippi, USA.ORCID 0000-0002-8758-3696
Marco A TovarSocios En Salud Sucursal Peru, Lima, Peru.
J Santiago PalominoSocios En Salud Sucursal Peru, Lima, Peru.
Nadia N BarredaSocios En Salud Sucursal Peru, Lima, Peru.
Oswaldo M SanabriaSocios En Salud Sucursal Peru, Lima, Peru.
Jesús PeinadoSocios En Salud Sucursal Peru, Lima, Peru.
Claudio RamirezDirección de Redes Integradas de Salud Lima Norte, Lima, Peru.
L Fernando Llanos ZavalagaDirección de Redes Integradas de Salud Lima Norte, Lima, Peru.
Gissela ValderramaSocios En Salud Sucursal Peru, Lima, Peru.
Molly F FrankeDepartment of Global Health and Social Medicine, Harvard Medical Schoolgrid.471403.5, Boston, Massachusetts, USA.
Carole D MitnickDepartment of Global Health and Social Medicine, Harvard Medical Schoolgrid.471403.5, Boston, Massachusetts, USA.
Leonid Lecca *Socios En Salud Sucursal Peru, Lima, Peru.
Gustavo E Velásquez *Division of Global Health Equity, Brigham and Women's Hospital, Boston, Massachusetts, USA.ORCID 0000-0003-1438-0692
EsSALUD · PEBrigham and Women's Hospital · USHarvard University · USFederico Villarreal National University · PEPeruvian University of Applied Sciences · PE

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Safety and tolerability of new and repurposed drugs for MDR-TB treatmentK08AI141740 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI VELASQUEZ, GUSTAVO EDUARDO · 2019 to 2023
$985k
NIAID NIH HHS K08 AI141740NIAID NIH HHS P30 AI060354
6 · The paper itself

Abstract

Widely available and reliable testing for SARS-CoV-2 is essential for the public health response to the COVID-19 pandemic. We estimated the diagnostic performance of reverse transcription PCR (RT-PCR) performed on saliva and the SD Biosensor STANDARD Q antigen test performed on nasopharyngeal swab compared to the reference standard, nasopharyngeal swab (NP) RT-PCR. We enrolled participants living and/or seeking care in health facilities in North Lima, Peru from November 2020 to January 2021. Consenting participants underwent same-day RT-PCR on both saliva and nasopharyngeal swab specimens, antigen testing on a nasopharyngeal swab specimen, pulse oximetry, and standardized symptom assessment. We calculated sensitivity, specificity, and predictive values for the nasopharyngeal antigen and saliva RT-PCR compared to nasopharyngeal RT-PCR. Of 896 participants analyzed, 567 (63.3%) had acute signs/symptoms of COVID-19. The overall sensitivity and specificity of saliva RT-PCR were 85.8% and 98.1%, respectively. Among participants with and without acute signs/symptoms of COVID-19, saliva sensitivity was 87.3% and 37.5%, respectively. Saliva sensitivity was 97.4% and 56.0% among participants with cycle threshold (

Indexed as

COVID-19SARS-CoV-2COVID-19 TestingHumansNasopharynxPandemicsPeruReverse Transcriptase Polymerase Chain ReactionReverse TranscriptionSalivaSpecimen HandlingantigenCOVID-19diagnosisnasopharyngeal swabPeruRT-PCRsalivaSARS-CoV-2validation

Identifiers

PMID35867471
PMCPMC9430815
OpenAlexW4285730443

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.