Evidence map›Paper›PMID 35864190›Full record

ArticleNature genetics2022

Loss of FOCAD, operating via the SKI messenger RNA surveillance pathway, causes a pediatric syndrome with liver cirrhosis.

Ricardo Moreno Traspas, Tze Shin Teoh, Pui-Mun Wong, Michael Maier, Crystal Y Chia, Kenneth Lay, Nur Ain Ali, Austin Larson, Fuad Al Mutairi, Nouriya Abbas Al-Sannaa and 37 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Genetic testing in liver diseases: Clinical applications.JHEP reports : innovation in hepatology · 2026
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  15. Genetics of liver disease in adults.Hepatology communications · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

47 authors at 18 institutions in 8 countries.

Ricardo Moreno TraspasLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore. ricardo.traspas@reversade.com.ORCID http://orcid.org/0000-0003-2607-107X
Tze Shin TeohLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Pui-Mun WongLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Michael MaierLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Crystal Y ChiaLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Kenneth LayLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Nur Ain AliLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore.
Austin LarsonSection of Pediatrics-Clinical Genetics and Metabolism, Children's Hospital Colorado, Aurora, CO, USA.
Fuad Al MutairiDepartment of Genetics and Precision Medicine, King Abdullah Specialized Children Hospital, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia.
Nouriya Abbas Al-SannaaPediatric Services, John Hopkins Aramco Healthcare, Dhahran, Saudi Arabia.
Eissa Ali FaqeihSection of Medical Genetics, Children's Specialist Hospital, King Fahad Medical City, Riyadh, Saudi Arabia.
Majid AlfadhelDepartment of Genetics and Precision Medicine, King Abdullah Specialized Children Hospital, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Saudi Arabia.
Huma Arshad CheemaDivision of Pediatric Gastroenterology-Hepatology and Nutrition, The Children's Hospital and The Institute of Child Health, Lahore, Pakistan.
Juliette DupontDepartment of Pediatrics, Genetic Services, Lisbon North University Hospital Center, Lisbon, Portugal.
Stéphane BézieauMedical Genetics Service, Nantes University Hospital Center, Nantes, France.ORCID http://orcid.org/0000-0003-0095-1319
Bertrand IsidorMedical Genetics Service, Nantes University Hospital Center, Nantes, France.
Dorrain Yanwen LowSingapore Phenome Center, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.ORCID http://orcid.org/0000-0002-7742-3189
Yulan WangSingapore Phenome Center, Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.
Grace TanDepartment of Pediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Poh San LaiDepartment of Pediatrics, Yong Loo Lin School of Medicine, National University of Singapore, Singapore, Singapore.
Hugues PiloquetGastropediatrics Department, Nantes University Hospital Center, Nantes, France.
Madeleine JoubertAnatomopathology Department, Nantes University Hospital Center, Nantes, France.
Hulya KayseriliMedical Genetics Department, School of Medicine, Koç University, Istanbul, Turkey.ORCID http://orcid.org/0000-0003-0376-499X
Kimberly A KrippsDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.
Shareef A NahasRady Children's Institute for Genomic Medicine, San Diego, CA, USA.
Eric P WartchowDepartment of Pathology and Laboratory Medicine, Children's Hospital Colorado, Aurora, CO, USA.
Mikako WarrenDepartment of Pathology and Laboratory Medicine, Children's Hospital Los Angeles, University of Southern California Keck School of Medicine, Los Angeles, CA, USA.
Gandham SriLakshmi BhavaniDepartment of Medical Genetics, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, India.
Majed DasoukiDepartment of Pediatric Genetics, AdventHealth Medical Group, Orlando, FL, USA.
Renata SandovalDepartment of Oncogenetics, Hospital Sírio-Libanês, Brasília, Brazil.
Elisa CarvalhoDepartment of Pediatric Gastroenterology and Hepatology, Hospital da Criança de Brasília José Alencar, UniCEUB, Brasília, Brazil.
Luiza RamosMendelics Genomic Analysis, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-1668-1683
Gilda PortaDepartment of Pediatric Hepatology, Transplant Unit, Hospital Sírio-Libanês, São Paulo, Brazil.
Bin WuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Harsha Prasada LashkariDepartment of Pediatrics, Kasturba Medical College, Mangalore, India.ORCID http://orcid.org/0000-0002-6398-6546
Badr AlSaleemSection of Pediatric Gastroenterology-Hepatology, Children's Specialist Hospital, King Fahad Medical City, Riyadh, Saudi Arabia.
Raeda M BaAbbadSection of Pediatric Gastroenterology-Hepatology, Children's Specialist Hospital, King Fahad Medical City, Riyadh, Saudi Arabia.
Anabela Natália Abreu FerrãoDepartment of Pediatrics, Hematology Unit, Lisbon North University Hospital Center, Lisbon, Portugal.
Vasiliki KarageorgouCentogene AG, Rostock, Germany.
Natalia Ordonez-HerreraCentogene AG, Rostock, Germany.
Suliman KhanCentogene AG, Rostock, Germany.
Peter BauerCentogene AG, Rostock, Germany.
Benjamin CogneMedical Genetics Service, Nantes University Hospital Center, Nantes, France.ORCID http://orcid.org/0000-0002-5503-6292
Aida M Bertoli-AvellaCentogene AG, Rostock, Germany.ORCID http://orcid.org/0000-0001-9544-1877
Marie VincentMedical Genetics Service, Nantes University Hospital Center, Nantes, France.ORCID http://orcid.org/0000-0003-1010-5618
Katta Mohan GirishaDepartment of Medical Genetics, Kasturba Medical College, Manipal Academy of Higher Education, Manipal, India.ORCID http://orcid.org/0000-0002-0139-8239
Bruno ReversadeLaboratory of Human Genetics and Therapeutics, Genome Institute of Singapore, A*STAR, Singapore, Singapore. bruno@reversade.com.ORCID http://orcid.org/0000-0002-4070-7997
Agency for Science, Technology and Research · SGCentogene (Germany) · DEManipal Academy of Higher Education · INNanyang Technological University · SGChildren's Hospital Colorado · USHospital Sírio-Libanês · BRKing Fahd Medical City · SAKing Saud bin Abdulaziz University for Health Sciences · SANantes Université · FRNational University of Singapore · SGChildren’s Institute · USFlorida Hospital Medical Group · USHospital Universitário de Brasília · BRKoç University · TRMendelics · BROregon Health & Science University · USSaudi Aramco Medical Services Organization · SAUniversity of Southern California · US

Funding

DBT-Wellcome Trust India Alliance IA/CRC/20/1/600002
6 · The paper itself

Abstract

Cirrhosis is usually a late-onset and life-threatening disease characterized by fibrotic scarring and inflammation that disrupts liver architecture and function. While it is typically the result of alcoholism or hepatitis viral infection in adults, its etiology in infants is much less understood. In this study, we report 14 children from ten unrelated families presenting with a syndromic form of pediatric liver cirrhosis. By genome/exome sequencing, we found recessive variants in FOCAD segregating with the disease. Zebrafish lacking focad phenocopied the human disease, revealing a signature of altered messenger RNA (mRNA) degradation processes in the liver. Using patient's primary cells and CRISPR-Cas9-mediated inactivation in human hepatic cell lines, we found that FOCAD deficiency compromises the SKI mRNA surveillance pathway by reducing the levels of the RNA helicase SKIC2 and its cofactor SKIC3. FOCAD knockout hepatocytes exhibited lowered albumin expression and signs of persistent injury accompanied by CCL2 overproduction. Our results reveal the importance of FOCAD in maintaining liver homeostasis and disclose a possible therapeutic intervention point via inhibition of the CCL2/CCR2 signaling axis.

Indexed as

Liver CirrhosisTumor Suppressor ProteinsAdultAnimalsChildHepatocytesHumansLiverRNA, MessengerSyndromeZebrafishFOCAD protein, humanRNA, MessengerTumor Suppressor Proteins

Identifiers

PMID35864190
PMCPMC7615854
OpenAlexW4286203178

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.