Evidence map›Paper›PMID 35862996›Full record

ArticleMicrobiology spectrum2022

Culture-Free Phylogenetic Analysis of Legionella pneumophila Using Targeted CRISPR/Cas9 Next-Generation Sequencing.

Ana Domazetovska, Slade O Jensen, Matthew Gray, Michael Radzieta, Michael Maley

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Enrichment techniques for clinical metagenomics.Frontiers in cellular and infection microbiology · 2026
    Review
  3. Review
  4. Infection and drug resistance · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ana DomazetovskaDepartment of Microbiology and Infectious Diseases, Liverpool Hospitalgrid.415994.4, Liverpool, New South Wales, Australia.ORCID 0000-0001-9608-8956
Slade O JensenInfectious Diseases and Microbiology, School of Medicine, Western Sydney Universitygrid.1029.a, Sydney, Australia.ORCID 0000-0003-4489-589X
Matthew GrayNSW Health Pathology, Microbiology, Liverpool Hospitalgrid.415994.4, Liverpool, New South Wales, Australia.
Michael RadzietaInfectious Diseases and Microbiology, School of Medicine, Western Sydney Universitygrid.1029.a, Sydney, Australia.
Michael MaleyDepartment of Microbiology and Infectious Diseases, Liverpool Hospitalgrid.415994.4, Liverpool, New South Wales, Australia.
Liverpool Hospital · AUIngham Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Currently available methods for the laboratory investigation of Legionella pneumophila outbreaks require organism culture. The ability to sequence L. pneumophila directly from clinical samples would significantly reduce delays. Here, we develop a method for targeted next-generation sequencing (NGS) of selected L. pneumophila genes utilizing a CRISPR/Cas9-based target enrichment system. We determine the method's utility by typing cultured L. pneumophila isolates and subsequently apply the method directly to patient samples. We sequenced 10 L. pneumophila isolates by 2 methods, (i) whole-genome sequencing (WGS) and (ii) targeted (CRISPR/Cas9-based)

Indexed as

LegionellaLegionella pneumophilaLegionnaires' DiseaseCRISPR-Cas SystemsHigh-Throughput Nucleotide SequencingHumansPhylogenyCRISPR/Cas9Legionella pneumophilaphylogenetic analysistargeted NGS

Identifiers

PMID35862996
PMCPMC9430934
OpenAlexW4285013426

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.