Evidence map›Paper›PMID 35862728›Full record

ArticleJournal of bacteriology2022

Cooperativity in ATP Hydrolysis by MopR Is Modulated by Its Signal Reception Domain and by Its Protein and Phenol Concentrations.

Jayanti Singh, Ruchi Anand, Amnon Horovitz

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Jayanti SinghDepartment of Chemistry, Indian Institute of Technology Bombaygrid.417971.d, Mumbai, Maharashtra, India.ORCID 0000-0003-3970-7938
Ruchi AnandDepartment of Chemistry, Indian Institute of Technology Bombaygrid.417971.d, Mumbai, Maharashtra, India.ORCID 0000-0002-2045-3758
Amnon HorovitzDepartment of Chemical and Structural Biology, Weizmann Institute of Sciencegrid.13992.30, Rehovot, Israel.
Indian Institute of Technology Bombay · INWeizmann Institute of Science · IL

Funding

EMBO 8301
6 · The paper itself

Abstract

The NtrC family of AAA+ proteins are bacterial transcriptional regulators that control σ54-dependent RNA polymerase transcription under certain stressful conditions. MopR, which is a member of this family, is responsive to phenol and stimulates its degradation. Biochemical studies to understand the role of ATP and phenol in oligomerization and allosteric regulation, which are described here, show that MopR undergoes concentration-dependent oligomerization in which dimers assemble into functional hexamers. The oligomerization occurs in a nucleation-dependent manner with a tetrameric intermediate. Additionally, phenol binding is shown to be responsible for shifting MopR's equilibrium from a repressed state (high affinity toward ATP) to a functionally active, derepressed state with low-affinity for ATP. Based on these findings, we propose a model for allosteric regulation of MopR.

Indexed as

DNA-Binding ProteinsTrans-ActivatorsAdenosine TriphosphateBacterial ProteinsDNA-Directed RNA PolymerasesHydrolysisPhenolPhenolsTranscription FactorsAdenosine TriphosphateBacterial ProteinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesPhenolPhenolsTrans-ActivatorsTranscription FactorsAAA+allosteryoligomerizationphenolphosphate-binding protein

Identifiers

PMID35862728
PMCPMC9380524
OpenAlexW4285801856

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.